Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14850 653 / 0 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 347 / 8e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 327 / 3e-96 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 323 / 3e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 323 / 4e-96 MEF22 mitochondrial editing factor 22 (.1) AT5G13230 322 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 324 / 1e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 318 / 1e-93 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 310 / 2e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 311 / 3e-91 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006123 [exp] 991 / 0 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006124 [exp] 917 / 0 AT3G22520 340 / 4e-106 unknown protein Lus10041202 [exp] 555 / 0 AT3G22520 327 / 1e-104 unknown protein Lus10039117 [exp] 335 / 1e-100 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 337 / 1e-99 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 332 / 2e-99 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000233 [exp] 315 / 2e-99 AT3G22520 215 / 1e-66 unknown protein Lus10013991 [exp] 337 / 2e-98 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 329 / 2e-97 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086900 [exp] 766 / 0 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G153800 [exp] 421 / 1e-133 AT4G14840 329 / 7e-106 unknown protein Potri.010G086700 [exp] 406 / 4e-128 AT3G22520 320 / 5e-102 unknown protein Potri.010G136200 [exp] 359 / 2e-108 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G001200 [exp] 353 / 4e-108 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 343 / 3e-102 AT3G22690 582 / 0.0 unknown protein Potri.003G191000 [exp] 341 / 4e-101 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 337 / 1e-99 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G129100 [exp] 342 / 3e-99 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 333 / 6e-99 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010551 pacid=23156698 polypeptide=Lus10010551 locus=Lus10010551.g ID=Lus10010551.BGIv1.0 annot-version=v1.0 ATGGAACGCCTCTGCAAATGGCTGTTGAGAAGCAATGGGGCGGCAATGATTCCTTGCAGAAATCGCACCAGCTATCCCACGATGTCTTCTCTTGGTTCCT CCATTCCAAAGTTGACCGGCTACGACGCTTGCAAAACGACAAAAAAAAGCTGCTACTTCCTTCGATTTAGACACCTTGTTTCAACTTTACCATTTCACAG TCAGTCCAACGACTGTCTTCTCTTCTCCGGATCCAACTTCCAGGTAGAAACTACTAGTACCACCGCTTCCATCTCCGACAATATCTCTCCGGTCGGTCTT CTCTCCTCAGCTCCAACTTGTAGCAACGCACTTGTGAGGACTTCACCATGTCGGACCACTTCATCGCTCCTTGGGATTTGCAGGAAGAGCCGGTGGATGA GTGCGCGCTATGGTTCACCATCTCCGCTGCAGAATGATCAAATTGTGGGGAATGGGATCCAAAATGGTGGTAATCCGTTTGCTGAGAATGGCTCGCCTCA AGATAAGAAGCTGGTGAATGATGTTATTAATAATGTAATTAGTGAGCTGAACAGTGTCGATGTTATCAACGAGGAAGTGAATAATGAGAATGGGACTAGC CAGCCTGGGGAGTCCGGTGAGCTTAGGAATATCCATCCTGGTGACACTGGTGAAGGGTTACCGTATGCTCCTGTGGATTGGCCTAACCCAGGTGACAACT GGACCTGGAAGGTAGGGAGGAGGATTAACGCTGTTGGGTTCTTCCAAGATAGGTTTTTGTATCCACCAAAACATTTCCCCAAAGTGACAGGTCTGAGAGC TCCGTTTGCAAGCAGGACTGCTGTTACCAACTATATCCGCACGGTCTTTCCAGATTCGAATGTTGATGCATTTTTCTCATCCTTCGCTTGGAAGGTCCCT GGAAAGCCGCTGTCACCGGCAAAAGTGGAATTTGTCCCTATCACTTCCCCAAAGCCTTCAGACAATGCAAACAAGGAAGTCGAAGGGCAAGGAGAAGTCT CTCGTCTGAGAAAAAGGAAGCCAAAATCACCACCTCCACCACCATTGCCACCTCCTCCTAAGAAGAAGAAAACACGGAATGCTGCAAAACCATCATCTGT ACCATCTAAGCAGAAATCGAACCGGAAATCAATCCAGAAAAATGTAGCTGCATCATCATCTGCAGCTAAGCGAAAAACTCGGCATGGTGCTAAGCAAACT GTTCCGGTTCCTTTTGCTGATGTGAAGGATGGACAGGCTGAGGAGGAAATGTTCAATATTCCTATACCAGAGGACTTCGACAACTATCTCAACTCTTTAG AAGACATCATCGCTCAGCCACTATCTGGTTCCATGTCTGTTCAGCAGCCTACAACTAGGGAGTCTCCTTTAGCTGATGAGGAGATAGCTGAAGCTAGGCA CAGGCTTTCTTCCTTGCTTGTTATGGACTTCCCTTCACTCGTTTTGTCGAAAAACTATGCCGAACTTCCAGGACTAGCTACTAAACTTCGCAAGGATCCA CATCTGACTGCCGAACAGCTTGTGAAACTGAAGCTGATCGAGGAAATTCCATCGTTCAGGGAAGTGTTTTTGGAGAGTAGGGATATCATAGACCAGATTG ACAGGCAGTTTGGGACCCTTGATGCTAACAAGGCAAAGGTTGCTTCTCTCAAGAGTGAGTATAGCGAGCTCAAGTACAAAACTGACGAACTTCGGGCACA AATAGATAGTAACTCTGCAGCCGTCCAAGAAATCAACAATGAAATTGCGAGGCTCCAGGCACGAAAAGCAGAGCTGATTAAGGCAGCCGAATCAAACAAA GCAGCTAAGCTGGAGGTGAGCTATGCACAGAAGATGGTGGCGAATGCGATCCCGAATGTGGTCCGTGAAATTCAAAATTCAAACTCCGAGGCTCCAGAGT GGGATGTGAAGAGGAGCAATGCAGTGAAGAGGGAGGAAGAAATACTGGCCAAGTTTGCACCTTTGCAAGGGTTCTCACTGGTTCCATCACCCTTCCAGGT TATAATCGTCCAATCTGCCTACCATGGGCTTCGCCAGCGGCAAGGACAAATGGCCGTCTTCAGCCCCAATGCGCTCGCGTCGCTTCTCGAATCCGCCGTC TCAACTCGCCGCCCCCTTCTCGGCAGAGCCACTCATGCCCAAATCATCAAGACTCTTTTTCTTCTTCCTCCCCACCACCTCCCTCCTTTCCTCTCCAACC ATCTCGTCAGCATGTACTCCAAATTCGGCCTCCCTGGTCCCGCCGAGCTCCTTCTCCGGCTAGCTCCTTCCCGCTCCGTTGTCACCTGGACTTCTCTCAT CTCCGGATGCGTCCAGAACGGCCACTTCTCCTCCGCCCTACGTCACTTCTCTAACATGCGCCGCGACGACATTCTCCCCAATGATTTCACCCTTCCCTGC GCCTTCAAGGCGTCCGCTTTCCTCAAGCTTCGCTTCGTAGGACGTCAAGTTCATGCCTTGTCGACTGGGTTGATAGCCGATGCCGAGAAACTGTTCGATG AAATGCCTGAACGAAATATTGTCACGTGGAATGCGTTTATTTCTAACACTGTTCTGGACGGGAGGCCCAAGGCTGCTATCCAAGCGTTTGTTGAATTTGT TCGGGTGGGTGGAGAGCCGGATGGGATAACCTTCTTTGCATTTCTGAATGCATGTGCTGATACATTGAACTTAGTGCTGGGGAAACAATTACATGGGTTG GTGATGCGTAGTGGGTTTGAGACAGAGGTTTCCGTTTCTAATGGCCTTATTGATTTTTATGGCAAGTGTAAGGAGGTTCGATTGGCTGAGATGGTTTTCG ATGAAATAAAGAGGAGAAATTTGGTTTCGTGGGGTTCAATGGTAGCTACATACGAACAGAATAATGAAAAGGAGAAAGCTTGTATGGTATTTACGGAATG CAGGAGATTAGGGGTTGAGCCAACTGATTACCTGATTTCAAGTGTGGTCAGTGCTTGTGCAGAACTCGCTGCGCTTGATTGGGAAGACATGTATGGAAAA TGCGGAAGCATACGTGATGCCGAGCAGACCTTTCGCGAGATGCCTGAGAAGAACTTGTTTGCTTGGAATGCAATGATCAGTGGGTATGCACACCAAGGAC ATGCTGATATGGCCATCGGATTGTTTGGAGAGATGACTTCTGTGGTTGCTCCGAATTACGTGACATTCGTCTGTGTCTTATCAGCTTGCAGACCAGAGCA TTATGCTTGTGTTGTGGACATGTTGGCTCGATCCGGATTAGTAGAGCGGGCCTATGATTTTGTGCAAAAACTGCCAATTAGGCCAACAATTTCCATCTGG GGAGCTCTTTTAAACGCTTGTAGGGTGCATGGGAAGCCGGAGATAGGGAAAATTGCTGCTGATAACCTATTTGAACTCGATCCAAAGGATTCCGGCAATC ATGTACTGCTGTCAAATATGTTTGCTGTTGCTGGCAGGTGGGAAGAAGCTACTCTTGTGAGAAAAGAAATGAATGAGGTTGGAATCAAGAAAGGCTACAT CCCAGATACTAACTACGCGCTGTTTGATTTAGAAGAAGAGAAGAAAACAGAAGTTTGGAATCACAGCGAGAAAATTGATCTGGCGTTCTGTCTCATAGCC ATTCCACCTGGAGTACCAATTAGGATAACGAAGAACCTCAGGATTTGTGGGGATTGCCACAGTGCCTTCAAACTCATATCGGCCATTGTTCGCAGAGAAA TTTTGGTCAGGGATATCATTTCCGGGATGGTCAATGCTCCTGAAATGATTATTGGTGACTCGTTCACTATTCTATCAAATTTTCGCCGTTCAGAGGTTTG A
AA sequence Show only first row Show all	>Lus10010551 pacid=23156698 polypeptide=Lus10010551 locus=Lus10010551.g ID=Lus10010551.BGIv1.0 annot-version=v1.0 MERLCKWLLRSNGAAMIPCRNRTSYPTMSSLGSSIPKLTGYDACKTTKKSCYFLRFRHLVSTLPFHSQSNDCLLFSGSNFQVETTSTTASISDNISPVGL LSSAPTCSNALVRTSPCRTTSSLLGICRKSRWMSARYGSPSPLQNDQIVGNGIQNGGNPFAENGSPQDKKLVNDVINNVISELNSVDVINEEVNNENGTS QPGESGELRNIHPGDTGEGLPYAPVDWPNPGDNWTWKVGRRINAVGFFQDRFLYPPKHFPKVTGLRAPFASRTAVTNYIRTVFPDSNVDAFFSSFAWKVP GKPLSPAKVEFVPITSPKPSDNANKEVEGQGEVSRLRKRKPKSPPPPPLPPPPKKKKTRNAAKPSSVPSKQKSNRKSIQKNVAASSSAAKRKTRHGAKQT VPVPFADVKDGQAEEEMFNIPIPEDFDNYLNSLEDIIAQPLSGSMSVQQPTTRESPLADEEIAEARHRLSSLLVMDFPSLVLSKNYAELPGLATKLRKDP HLTAEQLVKLKLIEEIPSFREVFLESRDIIDQIDRQFGTLDANKAKVASLKSEYSELKYKTDELRAQIDSNSAAVQEINNEIARLQARKAELIKAAESNK AAKLEVSYAQKMVANAIPNVVREIQNSNSEAPEWDVKRSNAVKREEEILAKFAPLQGFSLVPSPFQVIIVQSAYHGLRQRQGQMAVFSPNALASLLESAV STRRPLLGRATHAQIIKTLFLLPPHHLPPFLSNHLVSMYSKFGLPGPAELLLRLAPSRSVVTWTSLISGCVQNGHFSSALRHFSNMRRDDILPNDFTLPC AFKASAFLKLRFVGRQVHALSTGLIADAEKLFDEMPERNIVTWNAFISNTVLDGRPKAAIQAFVEFVRVGGEPDGITFFAFLNACADTLNLVLGKQLHGL VMRSGFETEVSVSNGLIDFYGKCKEVRLAEMVFDEIKRRNLVSWGSMVATYEQNNEKEKACMVFTECRRLGVEPTDYLISSVVSACAELAALDWEDMYGK CGSIRDAEQTFREMPEKNLFAWNAMISGYAHQGHADMAIGLFGEMTSVVAPNYVTFVCVLSACRPEHYACVVDMLARSGLVERAYDFVQKLPIRPTISIW GALLNACRVHGKPEIGKIAADNLFELDPKDSGNHVLLSNMFAVAGRWEEATLVRKEMNEVGIKKGYIPDTNYALFDLEEEKKTEVWNHSEKIDLAFCLIA IPPGVPIRITKNLRICGDCHSAFKLISAIVRREILVRDIISGMVNAPEMIIGDSFTILSNFRRSEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10010551 [exp]	0	1
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	4.2	0.9232
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10039097 [exp]	4.5	0.9067
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10010104 [exp]	5.5	0.9117
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	7.5	0.9041
AT3G61700			Plant protein 1589 of unknown ...		Lus10019011 [exp]	8.1	0.9053
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10040218 [exp]	15.0	0.9038
AT5G49560			Putative methyltransferase fam...		Lus10026017 [exp]	15.0	0.8563
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10009670 [exp]	16.2	0.9029
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	17.5	0.8987
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	18.6	0.9109

Compare expression of checked genes

Lus10010551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.