Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22490 277 / 7e-94 Seed maturation protein (.1) AT3G22500 267 / 5e-90 ATECP31 LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31, Seed maturation protein (.1) AT1G03120 117 / 2e-32 ATRAB28 responsive to abscisic acid 28 (.1) AT5G27980 108 / 5e-29 Seed maturation protein (.1) AT5G53260 71 / 7e-15 Seed maturation protein (.1) AT5G53270 63 / 4e-12 Seed maturation protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006121 [exp] 412 / 3e-147 AT3G22490 311 / 1e-107 Seed maturation protein (.1) Lus10019001 [exp] 209 / 2e-67 AT3G22490 262 / 3e-88 Seed maturation protein (.1) Lus10042604 [exp] 164 / 1e-49 AT3G22490 234 / 5e-77 Seed maturation protein (.1) Lus10015948 [exp] 122 / 5e-34 AT3G22490 152 / 6e-46 Seed maturation protein (.1) Lus10022058 [exp] 93 / 9e-24 AT3G22490 98 / 6e-26 Seed maturation protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048000 [exp] 222 / 2e-72 AT3G22490 229 / 4e-75 Seed maturation protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04927 [flax] [poplar] SMP Seed maturation protein
Representative CDS sequence Show only first row Show all	>Lus10010553 pacid=23156647 polypeptide=Lus10010553 locus=Lus10010553.g ID=Lus10010553.BGIv1.0 annot-version=v1.0 ATGAGTCAGGAGCAGCCAAGGAGGCCGCAACAAGGTAAGGATATTGATCCGATCAAGTACGGTGACGTTTTTGACGTATCAGGAAAGCTTGCATCCAAGA CTATAGCCCCTGAAGATGCCAACATGATGCAAAGTGCTGAGACGATGGTGTTTGGGAAGACTCAGAAAGGAGGTCCTGCTGCAGCCATGCAATCCGCGGC CACTTTCAACGAAAGAGCCGGTCTGGTTGGTCATCACCAGGCCACCGATGGTGTGTCGGTGACAGAGACAGACATTCCGGGTGCTCGGATAATAACGGAG AGTGTGGGCGGGCAGGTTCTGGGGCAATTCGTGCAGCCAACTCCTGTCCTGGGTGTTGATGTAGATGTTAACGTGGTTGTGCAGGATAAGATTACGATAG GGGAAGCCCTGGAGGCGACGGGGAGGACGTCAGGTGACAAGGCGGTTGATCAGAGCGATGCCTCCGCTATCCAGGCGGCAGAGGCAAGAGCCACGGGGAG TAGTGTTACAGTACCCGGTGGGCTTGCGGCTGCAGCTCAGTCGGCTGCTACTTACAACGCTGGGGTGGCGAGAGATGAGGCCAAGATTAAGCTCAGAGAT GTTTTGAGGGATGCGGCGGGGAAGTTGCCAGCGGATAAGGTGGTGACACGAGAGGATGCGGAAGGAGTGGCGAATGCGGAGATGAGGAACAACGCCAATG TGTCAACCAATCCTGCGGGGGTAGCTGCTTCCATGATTTCAGCTGCCAGGCTGAACCAGGATGTTGGTGGTGCCCCATAA
AA sequence Show only first row Show all	>Lus10010553 pacid=23156647 polypeptide=Lus10010553 locus=Lus10010553.g ID=Lus10010553.BGIv1.0 annot-version=v1.0 MSQEQPRRPQQGKDIDPIKYGDVFDVSGKLASKTIAPEDANMMQSAETMVFGKTQKGGPAAAMQSAATFNERAGLVGHHQATDGVSVTETDIPGARIITE SVGGQVLGQFVQPTPVLGVDVDVNVVVQDKITIGEALEATGRTSGDKAVDQSDASAIQAAEARATGSSVTVPGGLAAAAQSAATYNAGVARDEAKIKLRD VLRDAAGKLPADKVVTREDAEGVANAEMRNNANVSTNPAGVAASMISAARLNQDVGGAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22490			Seed maturation protein (.1)		Lus10010553 [exp]	0	1
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10036939 [exp]	11.6	0.6717
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028368 [exp]	12.8	0.6625
					Lus10028962 [exp]	16.7	0.6500
AT1G71530			Protein kinase superfamily pro...		Lus10009464 [exp]	24.5	0.6494
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10007340 [exp]	25.5	0.6502
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10016190 [exp]	46.2	0.6236
AT1G14600	GARP		Homeodomain-like superfamily p...		Lus10029808 [exp]	47.1	0.6448
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	59.7	0.6191
					Lus10011276 [exp]	64.2	0.6088
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10025030 [exp]	66.9	0.5486

Compare expression of checked genes

Lus10010553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.