Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05420 100 / 1e-25 OFP ATOFP12, OFP12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) AT2G32100 96 / 5e-24 OFP ATOFP16, OFP16 RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, ovate family protein 16 (.1) AT4G14860 81 / 1e-18 OFP ATOFP11 ovate family protein 11 (.1) AT2G36050 72 / 5e-15 OFP ATOFP15, OFP15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, ovate family protein 15 (.1) AT3G52540 72 / 1e-14 OFP ATOFP18, OFP18 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, ovate family protein 18 (.1) AT5G04820 70 / 3e-14 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) AT1G79960 67 / 3e-13 OFP ATOFP14, OFP14 ovate family protein 14 (.1) AT2G18500 60 / 1e-10 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT5G22240 55 / 4e-09 OFP ATOFP10, OFP10 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 10, Ovate family protein (.1) AT5G19650 55 / 5e-09 OFP ATOFP8, OFP8 ovate family protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006120 [exp] 261 / 3e-87 AT1G05420 103 / 6e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10006912 [exp] 116 / 3e-32 AT1G05420 112 / 2e-30 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10014677 [exp] 116 / 4e-32 AT1G05420 109 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10016979 [exp] 69 / 1e-13 AT5G04820 105 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10021303 [exp] 68 / 3e-13 AT5G04820 103 / 8e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10035891 [exp] 62 / 4e-11 AT1G79960 166 / 2e-48 ovate family protein 14 (.1) Lus10034150 [exp] 59 / 2e-10 AT5G04820 134 / 8e-38 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10043243 [exp] 58 / 7e-10 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10011092 [exp] 57 / 2e-09 AT5G19650 99 / 3e-24 ovate family protein 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G153500 [exp] 141 / 5e-42 AT4G14860 103 / 1e-27 ovate family protein 11 (.1) Potri.010G087200 [exp] 132 / 6e-38 AT4G14860 101 / 3e-26 ovate family protein 11 (.1) Potri.005G211300 [exp] 108 / 1e-28 AT4G14860 92 / 5e-23 ovate family protein 11 (.1) Potri.002G051200 [exp] 97 / 2e-24 AT4G14860 62 / 1e-11 ovate family protein 11 (.1) Potri.006G205500 [exp] 81 / 2e-18 AT5G04820 159 / 1e-47 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.016G072900 [exp] 79 / 2e-17 AT5G04820 153 / 2e-45 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.001G180400 [exp] 73 / 3e-15 AT1G79960 137 / 2e-38 ovate family protein 14 (.1) Potri.008G017500 [exp] 71 / 7e-15 AT5G04820 163 / 5e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.010G241500 [exp] 69 / 2e-14 AT5G04820 164 / 3e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.009G161600 [exp] 59 / 2e-10 AT5G04820 110 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10010554 pacid=23156657 polypeptide=Lus10010554 locus=Lus10010554.g ID=Lus10010554.BGIv1.0 annot-version=v1.0 ATGGGAACGACGACCTTCTTGTGGAGGAATCTCCTGAAATGCTTCCCTTCTTCCACTTCTCCAAACTCCTTCCTCGTCTCTCAACCCGACCCCCTTCCAC CGCCATCTTCTTCAACCGCCGCCGCCGCCGCCGTCATGTTCAACACCAACTACAACTCCCTCTACGACGACGTCTCCTCCCCCTTTGTGTCCTGCGTCTC CTCCTCCTTGGCGGCCTCCACCTCCACCTTCTTCTCCACCGCCACCGCACCATCCTCCTCTGAATCCGACTCATCCGACGTCGACGTTGACTCCCTTCCG CCGGATTTCGCCACCGTCTTGGCCTCCCCACGCTTCTTCTTCTCTTCCCCTGGCCTCTCCAATTCCATCTCCGACTCTTATAACAACAAGGTCGACCACG CGCCGCCGCTGGAAGGAGGAGTGGCGGTGAATAAGTTCTCGCCGGATCCTTACACGGACTTCAAGAAGTCGATGGAAGAGATGATTGATGCCCACAGGCG GCGGATAAAGGCCGACGACGAGGACTGGGACTACTTGAACCAACTGCTGACGTGTTACCTGACGTTGAATCCGGAGCACGCTCACAAGTACATAATTTCT GCCTTCGCTGACATTGTCGTCCTCTTACTCTCAGAGGAAGATAAAGAGTCCTCCAGATTCTGA
AA sequence Show only first row Show all	>Lus10010554 pacid=23156657 polypeptide=Lus10010554 locus=Lus10010554.g ID=Lus10010554.BGIv1.0 annot-version=v1.0 MGTTTFLWRNLLKCFPSSTSPNSFLVSQPDPLPPPSSSTAAAAAVMFNTNYNSLYDDVSSPFVSCVSSSLAASTSTFFSTATAPSSSESDSSDVDVDSLP PDFATVLASPRFFFSSPGLSNSISDSYNNKVDHAPPLEGGVAVNKFSPDPYTDFKKSMEEMIDAHRRRIKADDEDWDYLNQLLTCYLTLNPEHAHKYIIS AFADIVVLLLSEEDKESSRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10010554 [exp]	0	1
AT2G22180			hydroxyproline-rich glycoprote...		Lus10016800 [exp]	2.4	0.7444
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	6.7	0.7528
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10039312 [exp]	9.6	0.7465
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10017201 [exp]	10.4	0.7136
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019882 [exp]	12.0	0.7231
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Lus10027553 [exp]	15.7	0.7359
AT5G25840			Protein of unknown function (D...		Lus10006044 [exp]	18.3	0.7383
AT5G65020		ANNAT2	annexin 2 (.1.2)		Lus10041696 [exp]	19.0	0.6717
AT2G24400			SAUR-like auxin-responsive pro...		Lus10033348 [exp]	19.6	0.7353
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10031545 [exp]	20.3	0.6956

Compare expression of checked genes

Lus10010554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.