Plant FIBer expression Database

Lus10010559 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59650 201 / 2e-68 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006114
[exp]
249 / 2e-87 AT3G59650 204 / 2e-69 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2)
Lus10022178
[exp]
167 / 6e-51 AT3G59650 138 / 2e-39 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G126200
[exp]
197 / 5e-67 AT3G59650 202 / 8e-69 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF05047 L51_S25_CI-B8 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Representative CDS sequence
>Lus10010559 pacid=23156648 polypeptide=Lus10010559 locus=Lus10010559.g ID=Lus10010559.BGIv1.0 annot-version=v1.0
ATGGCCTTACGAGGCGTTTGGCAGCTGAAAAAGCTGGTTGTGAGCTACAGTGATTGGGGTGGTAGCAGCAGGGGAATCAGGGCATTCATGGAGTCGCACC
TCCCAACATTGAAAGCTGAGAATCCCCATCTGAAGGTGGAAACTGAACTCATTCGAGGCCAGCACCCGCACTTAAAGGCCTTTTACAAAAACAACAATGA
AAGAGTGGTATGCGTGAGGAACATGAGTTCAGATGAAGTATTACTGCATGCTACCAGGCTAAGGAATGCATTGGGAAGAAAGGTGGTCAAACTGAAGACG
AGACATGTCACCAAACACCCAAGTGTACAAGGTACATGGACAACAGGGCTCAAGTTTGAGGAGGCATGA
AA sequence
>Lus10010559 pacid=23156648 polypeptide=Lus10010559 locus=Lus10010559.g ID=Lus10010559.BGIv1.0 annot-version=v1.0
MALRGVWQLKKLVVSYSDWGGSSRGIRAFMESHLPTLKAENPHLKVETELIRGQHPHLKAFYKNNNERVVCVRNMSSDEVLLHATRLRNALGRKVVKLKT
RHVTKHPSVQGTWTTGLKFEEA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G59650 mitochondrial ribosomal protei... Lus10010559
[exp]
0 1
AT5G26800 unknown protein Lus10011180
[exp]
5.0 0.8837
AT2G34160 Alba DNA/RNA-binding protein (... Lus10002901
[exp]
13.5 0.8633
AT4G33250 ATTIF3K1, EIF3K eukaryotic translation initiat... Lus10027668
[exp]
14.6 0.8720
AT4G34880 Amidase family protein (.1) Lus10027852
[exp]
16.2 0.8221
AT1G36240 Ribosomal protein L7Ae/L30e/S1... Lus10019681
[exp]
20.4 0.8565
AT4G14320 Zinc-binding ribosomal protein... Lus10010195
[exp]
29.4 0.8547
AT5G27700 Ribosomal protein S21e (.1) Lus10015173
[exp]
29.6 0.8576
AT4G33250 ATTIF3K1, EIF3K eukaryotic translation initiat... Lus10039931
[exp]
29.8 0.8394
AT5G22330 ATTIP49A, RIN1 RESISTANCE TO PSEUDOMONAS SYRI... Lus10040479
[exp]
33.3 0.8428
AT1G76010 Alba DNA/RNA-binding protein (... Lus10005615
[exp]
33.6 0.8382

Lus10010559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.