Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22440 657 / 0 FRIGIDA-like protein (.1) AT4G14900 630 / 0 FRIGIDA-like protein (.1) AT5G48385 145 / 3e-37 FRIGIDA-like protein (.1) AT1G31814 91 / 4e-19 FRL2 FRIGIDA like 2 (.1) AT5G16320 90 / 4e-19 FRL1 FRIGIDA like 1 (.1) AT5G27230 90 / 1e-18 Frigida-like protein (.1) AT5G27220 69 / 7e-12 Frigida-like protein (.1) AT4G00650 47 / 3e-05 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006113 [exp] 887 / 0 AT3G22440 686 / 0.0 FRIGIDA-like protein (.1) Lus10008744 [exp] 172 / 4e-47 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Lus10002146 [exp] 170 / 3e-46 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10042965 [exp] 119 / 3e-28 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10032466 [exp] 113 / 2e-26 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10043012 [exp] 82 / 4e-16 AT4G00650 176 / 5e-50 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10032514 [exp] 82 / 7e-16 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10022433 [exp] 73 / 3e-13 AT4G00650 202 / 7e-60 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10016738 [exp] 70 / 2e-12 AT4G00650 193 / 8e-57 FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G153000 [exp] 732 / 0 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.018G078701 [exp] 227 / 3e-67 AT3G22440 189 / 4e-53 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 183 / 6e-51 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.014G175200 [exp] 174 / 7e-48 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.007G050800 [exp] 161 / 6e-43 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 136 / 3e-34 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.005G044000 [exp] 111 / 1e-25 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G043900 [exp] 109 / 6e-25 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044100 [exp] 108 / 8e-25 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.005G044200 [exp] 74 / 2e-13 AT5G27220 129 / 5e-30 Frigida-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10010560 pacid=23156701 polypeptide=Lus10010560 locus=Lus10010560.g ID=Lus10010560.BGIv1.0 annot-version=v1.0 ATGGGGTCGATCCCCGATCCAGGTGAGGTTTCTTCCTCCGACGTCACTCCTCCGCCCCCGAGCTTCGATGACTTCCAGCGCCAGACTTCTCTCATGACCA GCTGCACTCTTCTCTGGAAGGAGCTCTCCGACCATTTCACCACCCTCGAGAACAACCTCCAGAAGAAGTCCGATGCCTTGAAGCGCAAAATCCAGTCCCT AGACACTGAGACCAAAGCCTCCCTTGCTTCTCTAAAGAAGCGGGAAGTCACCATCGACGGCAGCGTCGAGATCGCCCTCGAGCGCCTCGACGACCGCTGT GAGGCCGCTCTCAAGTCCATCCACTCCGATCACCCCGACGGCGATGTTGACGACGACGAAGGACTCCTCCTCGCTCTCAAGGCCTTCTGCTTGAAGATGC GCTCCAGGGAGTTCTGGAACTTTGTAATTGCTAAGAAGAAGGAGCTGGACGGGCTGAGGAGCCAGCTTCCTATGGCGCTAGCGGAGTGCGTGGATCCTCC TAGGTTTGTGCTGGAGGCTATCTCGGAGGTTTTTCCGGTTGATAAGAGAGGGGATAGGACCGAGAAAGGGAATGATTTGGGATGGGCCTGTGTTGTGATT CTTGAGAGCTTGATCCCCGTGGTTATGGACCCTGTGATTGGCAAGTCCAGGCTTATGGTCACCCCGAAGGTGAAGAAGAGGGCTAACCAGATTGCGGAGA CATGGAAGAGGAGTTTGGAGGAGCGCGGTGGGATTGAGAATGTTAAAACTCCCGATGTTCATACTTTCTTGCAGCATTTGGTCACTTTTGGGATTGTGAA GACTGAGGATTTTGACTTGTACAGGAAGCTTGTCGTCGGCTCGGCTTGGCGCAAGCAGATGCCGAAACTTGCAGTCTCTCTTGGCTTGGGTGATGAAATG CCTGATATGATCCGAGAACTAATTGGTAGGGGACAGCAACTCGATGCGGTGCATTTCACTTATGAGGTTGGTCTTGTGGATAAGTTCCCCCCTGTGCCCT TGTTGAAAGCCTTTCTACGGGATGCAAAGAAGGCTGCAGCGTCTATACTAGAGGATCCTGATAATCCTGGCAGGGCTACGCAACTTGCTGTGCGGAAGGA ACAGTCAGCACTCCGGTCAGTGATAAAGTGCATTGAGGAATATAAACTCGAAGCCGAGTTCCCTCCGGAGAATCTCAAGAAATGGCTCGAACAACTGGAG AAGGTGAAGACCGAGAAGAGAAAGCCAGTTGCGGTCCCTGCAAACAAGAGAACCCGTGCAAGCACTGCTGGACCAATGCCTCCTGCCAAGGCTGGGCGTA TGACAAATGCCTATGTATCCTCTTTCCCAACACCACCAACATTCGTCAGGTCACCTTCACACCCTCAATACCCAGCTGCTGGGATACCAGCATATGCATC TCCACCACCACCACCACAAGCTGTATATGGCACCCCGAGTCCACAATCTCCGTACGCCTACTCCCCGGAACCAGTCCACCATCCGATTCCCGGATCATAT ACAATGAATTACCCACCACCGGGAGCTTATGGAGGTTATGCAACAACGGGGTTTGCACCAGCTTATCATCAGCAGGCTTACTACTGA
AA sequence Show only first row Show all	>Lus10010560 pacid=23156701 polypeptide=Lus10010560 locus=Lus10010560.g ID=Lus10010560.BGIv1.0 annot-version=v1.0 MGSIPDPGEVSSSDVTPPPPSFDDFQRQTSLMTSCTLLWKELSDHFTTLENNLQKKSDALKRKIQSLDTETKASLASLKKREVTIDGSVEIALERLDDRC EAALKSIHSDHPDGDVDDDEGLLLALKAFCLKMRSREFWNFVIAKKKELDGLRSQLPMALAECVDPPRFVLEAISEVFPVDKRGDRTEKGNDLGWACVVI LESLIPVVMDPVIGKSRLMVTPKVKKRANQIAETWKRSLEERGGIENVKTPDVHTFLQHLVTFGIVKTEDFDLYRKLVVGSAWRKQMPKLAVSLGLGDEM PDMIRELIGRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLRDAKKAAASILEDPDNPGRATQLAVRKEQSALRSVIKCIEEYKLEAEFPPENLKKWLEQLE KVKTEKRKPVAVPANKRTRASTAGPMPPAKAGRMTNAYVSSFPTPPTFVRSPSHPQYPAAGIPAYASPPPPPQAVYGTPSPQSPYAYSPEPVHHPIPGSY TMNYPPPGAYGGYATTGFAPAYHQQAYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	0	1
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	1.0	0.9119
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10030005 [exp]	2.2	0.8880
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035320 [exp]	3.2	0.8938
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038755 [exp]	4.2	0.8676
AT2G30933			Carbohydrate-binding X8 domain...		Lus10001516 [exp]	5.9	0.8736
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	6.0	0.8933
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10030003 [exp]	6.6	0.8919
AT3G22440			FRIGIDA-like protein (.1)		Lus10006113 [exp]	6.8	0.8342
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	8.5	0.8808
AT2G44830			Protein kinase superfamily pro...		Lus10042912 [exp]	8.8	0.8613

Compare expression of checked genes

Lus10010560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.