Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05385 67 / 9e-15 Psb27-H1, LPA19 LOW PSII ACCUMULATION 19, photosystem II 11 kDa protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006111 [exp] 169 / 4e-54 AT1G05385 202 / 2e-66 LOW PSII ACCUMULATION 19, photosystem II 11 kDa protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G152800 [exp] 85 / 2e-21 AT1G05385 201 / 9e-66 LOW PSII ACCUMULATION 19, photosystem II 11 kDa protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010561 pacid=23156630 polypeptide=Lus10010561 locus=Lus10010561.g ID=Lus10010561.BGIv1.0 annot-version=v1.0 ATGATGGTCGCTGCCGCCGCCGCCGTGAATCTTGCAGCTAATCCAGCCTCTGTCAAACCACCAAAGACTCGTTCAGAATACAAGACTTCTTCTTGTAACC TGCAACCGTATCAAGTTAGGGCGACTAGTAAGCGAGAAGCCTTAGTATCTGATGCCATCTCTTCTGTTTCTGTCCTGTTTCTCAACTGGATTCCTACACC ATTATCCGCCAGAGCTGAAGAGGAGGTGGAGGAGGATAAGGATGAAGGAGCAATCGGCGTAATCAAATCGTTCCTCGATCCAAACGAGAAGACGAAATCC GGGAAAGTTTTGCCGAAAGCTTACCTGAAGACAGCAAGAGAGGTGGTGAAGACGCTCCGAGAGTCGGTAAGATCCAAAGAACAATGCTAA
AA sequence Show only first row Show all	>Lus10010561 pacid=23156630 polypeptide=Lus10010561 locus=Lus10010561.g ID=Lus10010561.BGIv1.0 annot-version=v1.0 MMVAAAAAVNLAANPASVKPPKTRSEYKTSSCNLQPYQVRATSKREALVSDAISSVSVLFLNWIPTPLSARAEEEVEEDKDEGAIGVIKSFLDPNEKTKS GKVLPKAYLKTAREVVKTLRESVRSKEQC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Lus10010561 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10005174 [exp]	4.4	0.7933
AT1G69020			Prolyl oligopeptidase family p...		Lus10032378 [exp]	6.5	0.7872
AT5G07740			actin binding (.1)		Lus10015725 [exp]	15.5	0.7668
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	15.7	0.7780
					Lus10018990 [exp]	22.1	0.7552
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	23.6	0.7456
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	35.1	0.7670
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10037072 [exp]	43.4	0.7630
AT2G26680			unknown protein		Lus10030089 [exp]	44.9	0.6933
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10011775 [exp]	46.7	0.7417

Compare expression of checked genes

Lus10010561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.