Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14920 733 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 679 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G36740 435 / 1e-131 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 393 / 2e-116 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G14980 311 / 1e-87 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G58610 236 / 1e-63 PHD finger transcription factor, putative (.1) AT2G37520 147 / 6e-36 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 143 / 2e-34 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 132 / 8e-31 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G63900 105 / 6e-23 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006110 [exp] 2381 / 0 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042602 [exp] 520 / 1e-158 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10022053 [exp] 503 / 1e-152 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10015266 [exp] 219 / 3e-57 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 216 / 2e-56 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10018681 [exp] 196 / 2e-51 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 188 / 8e-49 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 177 / 5e-46 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10022055 [exp] 158 / 2e-40 AT5G36740 154 / 7e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087700 [exp] 1120 / 0 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 1053 / 0 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 564 / 5e-176 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G051400 [exp] 540 / 4e-168 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 341 / 5e-97 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 311 / 1e-92 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.009G072600 [exp] 236 / 4e-63 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 213 / 2e-56 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.006G083600 [exp] 148 / 4e-36 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 107 / 2e-23 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10010562 pacid=23156643 polypeptide=Lus10010562 locus=Lus10010562.g ID=Lus10010562.BGIv1.0 annot-version=v1.0 ATGCAGCCGCATAGAAGGTTAGCTCCTCAAACTCTTCAAAATTCTAAAGCTGTGGATGATTTTGATATGAGTAGCGAAGACGACAGTGGAATTGGTAGGA AGAGGAACAGGGGAGAAGTTAGTCGGCGTGGTGAGATGGATGACAGTGATAGAGATAGGGATAATTTCATTGAGGGGACCAGGTTGAATGTGTATGATTT CGACGAGTATGAAGGGAATGCAGCGGACATGAGAAGGATCAGACGGTCTGGAAACGGTGCGATTGATAGTCGCAGATTGTTTGGCTCAATGCCAGTTGGT AGAAATAGCCTCGAGAGAGACTACGATTCTGGTTCAAGTAGAGATGCTTTTCATGAGAAGAGAAAGGGTTCATACTTTGACAGAGCCAGTGGTTTGGCTC GTGGTGATCATTCTGCTAGGGAGGGAGTTCGGCTTCCGATTCCAGCTATGAAGGATAACTACGACTTAGATAAACCAATTCGGGTTCAAGGTAAAAATGG CGTTCTAAAAGTTATGGTGAACAAGAAAAAGAAGGTTGATGAGCCTTTCAATGGTTACAACAGTGCCTTGGAGCCTGGGAAAATAAGGAAGGGCGGGACA GTAGAATCTGCCAAGAAGAATGTTCCACTGCCTCCATCATATTACCCGGGGTCTAAAAAAGTTGAGAAAGCCATTCCATTTGTTGGGAGGGAGAAAACAC CGATAAATCTGCTAAATTCAGTGAAAAGTGCTGCTGTTGCTGCTGCTTCTGCTGATGATGATGCGAGTGACCGTGATTCTGATGATAGTGATGCGTTATT GACAAAGAACGCTAAGATGAGAGCCAAGCATATAGAACCTCGTAATTTTCAGAAGACCCCATCATACACAAAGATAAGTAAAAGCGCTGACATGAATTCT GATGACAGTGATACTTCCTTCAAGCAGGGACCAAGGAGTGCTGCAACTCTTAAATCAACAAAGAGGACAAGTGGCGGTGTCGAGAAAAGTACGCCTAAAC AGCTCCCAGCTAGTAAAAGCAATGAAGGAAAATCAAAGCGTGGTTCAGGCACTGAAAAACAAAAGTTGCGCGAAAAAATTAGGGGGATGCTTATAGATTC TGGCTGGACAATCGATTACAGGCCCAGGAGGAACAGAGACTATCTAGATGCTGTTTACATAAACCCTGCAGGAACAGCTTATTGGTCTATCATCAAGGCT TATGAAGCTCTTCTAAAGCAGCAAAAGGAAGACGAAGATGTTGCAAGAGCTAAGATGGCCTCTTCTCCATTTACACCACTATCAGATGACCTGCTCAGCC AACTGACAAGGAATACTAGGAAAAAAATGGAGAAAGAAATGAGAAAGAAACAAAGAGACAGCCGCAAGAATGAGAATGCAAGGGAAACCATGGGGAGAAA GGCATCAAGTAGTAGGTATGATGAAGAGAGCATGGACAGTGACAGTCATGAAGAGAAGTTGAGCTCCTTCGTAAAGCAAGGTAGTAAGCCATTTAAGGGA AATAGTTATCGTGACAGTTCTGCCAGTGTAGGTCAGAAATCGATGAACAATTTACCTGAAAACAATGAGAACTTGTCCTCTGGGTATACTAGTCACCATG GTAGGAAAAGCAGAAAACTAGGTCGATGCACCTTACTAGTACGCAAGTCTAATCAGGATTTGAACTCAGATGGAGATGGTTTTGTACCTTATACCGGGAA AAGAACATTACTTTCCTGGCTAGTTGACCGTGGAGCTGTGCAGTTGAGTCAAAAGGTAAGATACATGAATAGGAGACGGACAAAAGTCTTGCTGGAGGGC TGGGTCACAAGAGATGGCATCCATTGTGGCTGCTGTAGTAAAATCCTTACAGTTTCTAAGTTTGAGATCCATGCAGGAAGTAAACTCCGCCAACCCTTTC AAAACATATATCTCGATTCTGGGGTTTCTCTTTTGGATTGCCAGATCGATGCATGGAATAGACAAGAGGCTGCAGAGAATATTGGTTTTCACTCGGTAGA TATTCACGGTGATGATCCAAATGATGATACTTGTCCCCTTTGTGGCGATGGTGGAGATTTGATATGCTGTGATGGTTGTCCATCAACGTTTCATCAGAGC TGTCTGGGCATTGAGATGTTACCACCAGGCGACTGGCATTGCCCAAACTGCACGTGCAAGTTTTGTAGGTCAGCTAGTGACAATGTGGTGGATGAAGATG ATCCAACTGTTTCAGCACTTCCGACTTGCAGACTCTGTGCCAGAAAATATCATGAATCCTGCATGAAGGATTTGGATGCTGGAACAGTTGAAGGTGATAG TTCTAAATCTTGCTTCTGTAGCGGAAAATGCAGTGAGCTCCATGAGCGGTTGTTGAAGTATACGGGAGTCAAACACGAGCTGGAAGCAGGATTTTCATGG TCTATTATTCGGAGAGCAGACTTTGACTTGGACACATCGCTTCAGGGACTCCCTCAAAGGGTCGAGGGAAATTCAAAGCTGGCTGTGGCTTTGTCTGTAA TGGATGAATGCTTTTTGCCAATAATTGACAGGAGGAGTGGAATAAACTTGCTCCATGGTGTTCTTCATAACTGTGGGTCAAATTTTAATCGTCTGAACTA CAGTGGATTCTTTACTGTTATCTTGGAGAGGGGTGATGAAATAATTTCTGCTGCGTCCCTAAGACTGCATGGGACAGAATTGGCAGAGATGCCATTCATT GGAACTCGTCACATATATAGGCGGCAGGGGATGTGCAAGCGGCTTTTCTGTGCTGTTGAATCGGCACTCCGCTCTTTGAAGGTTGAGAGACTAATTATAC CAGCAATTTCTGAACTAATGCGTACTTGGACGGAGGTGTTTGGCTTCACTAAACTTGATGAATCCCTTAACCAAGAACTGAAGTCGATGAACACTATGGT GTTTCCTGGTGTGGATATGCTTCAGAAGCAGTTACTTGAACAAGGAAATGTGGAGAAAATGAACACTAGTAAAGGTGAGGAAGAGAAGAAATCTCTGGGG GATAAGTGTGTGGCTGTATCAAAACAATCTAATAGTGATTCTTCTGCTGGACATGATAACCATGAAAGTGACAATGGTGGTCTGGAACAATATAACGAGG GGGAAATTGGCCCGGCTAGTACAAAGTTAGATTCATTGATTCCAGATGCTTCAGTAACTGGTGTCTCTGCAAATAGCTCTTTGGATGCTTCCCAGGAACG TAAGCAGACTGTGAGTTCAGATTCAGGATTTGTGGACAAGTTGGATAAATCTGGAATAGACCAGGAGAATCTAGCTGATTGTCACACTAGCTCCAGTGAA CCTGTCGTTAATACGATAGCAGCAGGAAATTATTCTGGGGAAGATGATATTTCTTCTCATGCTGAGCTTAATGACCAGTTTCTTGGGGTTCCTTTGGATA ACGTCTCTGAGATGAGTGGCTCAATAGATGCTTCTGATGGAAATAAACGTCCAGTAGATTGCAAGCCAGTTAAGCTAGCGGATTCCGACCTAGCTGCCCT TGTAGATGAATCTGCTTCTGTTGCAAACCACTTGGAGAATAGCAATTTGTGTAAGGATGGTTATCCTGACCATGTTCAAGCACTCAATCTCAGCGACTCC ACTTCCGAGGGATATAAAGGTTCATTATCTACCGAACAAACTAAATCGGGTGGTTTCCGAAAAGAAGACAAAGTACCTGACGTCACTTCTGAGATTAAGT GCCCTCCTAGCTATATGATGAGTAATCATTCTGATGAGATGGAAGTAGATCCCCCATTGGATGACGATACTGAGATATACAAGGAAGTCGAATTAGCTGG TGCTTCTACAACAGACATCGACATGGCTGGCGTGGAAAGTGAGGGGATGGCTGTCGCAAATTTTGTCAGTGAGATGCATCTTATATCTCCAGAGCTGACC AAGTTTGATAGTCCCCAGAAGCAAGGCACATATCAAGCAGGATCTGCCCCTGTATCTGAAGCAGTAAATTGTGCAGCAAGTTTTCTACATGAACCAGAGC ATGGTCCAGAGACCGATAAGAGTGAAGGCGAAACAGAATCCGAGTAG
AA sequence Show only first row Show all	>Lus10010562 pacid=23156643 polypeptide=Lus10010562 locus=Lus10010562.g ID=Lus10010562.BGIv1.0 annot-version=v1.0 MQPHRRLAPQTLQNSKAVDDFDMSSEDDSGIGRKRNRGEVSRRGEMDDSDRDRDNFIEGTRLNVYDFDEYEGNAADMRRIRRSGNGAIDSRRLFGSMPVG RNSLERDYDSGSSRDAFHEKRKGSYFDRASGLARGDHSAREGVRLPIPAMKDNYDLDKPIRVQGKNGVLKVMVNKKKKVDEPFNGYNSALEPGKIRKGGT VESAKKNVPLPPSYYPGSKKVEKAIPFVGREKTPINLLNSVKSAAVAAASADDDASDRDSDDSDALLTKNAKMRAKHIEPRNFQKTPSYTKISKSADMNS DDSDTSFKQGPRSAATLKSTKRTSGGVEKSTPKQLPASKSNEGKSKRGSGTEKQKLREKIRGMLIDSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKA YEALLKQQKEDEDVARAKMASSPFTPLSDDLLSQLTRNTRKKMEKEMRKKQRDSRKNENARETMGRKASSSRYDEESMDSDSHEEKLSSFVKQGSKPFKG NSYRDSSASVGQKSMNNLPENNENLSSGYTSHHGRKSRKLGRCTLLVRKSNQDLNSDGDGFVPYTGKRTLLSWLVDRGAVQLSQKVRYMNRRRTKVLLEG WVTRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLDCQIDAWNRQEAAENIGFHSVDIHGDDPNDDTCPLCGDGGDLICCDGCPSTFHQS CLGIEMLPPGDWHCPNCTCKFCRSASDNVVDEDDPTVSALPTCRLCARKYHESCMKDLDAGTVEGDSSKSCFCSGKCSELHERLLKYTGVKHELEAGFSW SIIRRADFDLDTSLQGLPQRVEGNSKLAVALSVMDECFLPIIDRRSGINLLHGVLHNCGSNFNRLNYSGFFTVILERGDEIISAASLRLHGTELAEMPFI GTRHIYRRQGMCKRLFCAVESALRSLKVERLIIPAISELMRTWTEVFGFTKLDESLNQELKSMNTMVFPGVDMLQKQLLEQGNVEKMNTSKGEEEKKSLG DKCVAVSKQSNSDSSAGHDNHESDNGGLEQYNEGEIGPASTKLDSLIPDASVTGVSANSSLDASQERKQTVSSDSGFVDKLDKSGIDQENLADCHTSSSE PVVNTIAAGNYSGEDDISSHAELNDQFLGVPLDNVSEMSGSIDASDGNKRPVDCKPVKLADSDLAALVDESASVANHLENSNLCKDGYPDHVQALNLSDS TSEGYKGSLSTEQTKSGGFRKEDKVPDVTSEIKCPPSYMMSNHSDEMEVDPPLDDDTEIYKEVELAGASTTDIDMAGVESEGMAVANFVSEMHLISPELT KFDSPQKQGTYQAGSAPVSEAVNCAASFLHEPEHGPETDKSEGETESE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10010562 [exp]	0	1
AT5G65450		UBP17	ubiquitin-specific protease 17...		Lus10015894 [exp]	2.8	0.9538
AT1G10330			Tetratricopeptide repeat (TPR)...		Lus10030036 [exp]	3.7	0.9273
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Lus10009783 [exp]	4.1	0.9172
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	8.8	0.9410
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10041322 [exp]	10.2	0.9376
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10023864 [exp]	11.0	0.9299
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	11.7	0.9411
AT1G27850			unknown protein		Lus10006433 [exp]	12.0	0.9226
AT5G07740			actin binding (.1)		Lus10015724 [exp]	13.5	0.9203
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10040315 [exp]	17.0	0.9118

Compare expression of checked genes

Lus10010562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.