Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05430 61 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006108 [exp] 405 / 7e-144 AT1G05430 89 / 5e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086300 [exp] 140 / 3e-40 AT1G05430 70 / 4e-14 unknown protein Potri.008G154200 [exp] 140 / 4e-40 AT1G05430 69 / 8e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010563 pacid=23156685 polypeptide=Lus10010563 locus=Lus10010563.g ID=Lus10010563.BGIv1.0 annot-version=v1.0 ATGGGTGCAGCTCTCCTCGAGCTCGAGCATTCCCTCAGATCCCAGAAGGAATACTTGACTTCTCAAGAAGCAGGCTTACTCCAAGTGTGCAGGAGCAATG CTTTAAGGGCACTTACCTTTTTCTCATTGGTTGGAGCTTCTACTGCTTGGGGAGCGTCTCAAACTCAACAAGATGGAAAGGTTGAGGCTGTTATTCACTA CTTGATTCTATGTTCTGCTTCTACTTCCTTTCTCATGTTTTCTTGTCTTCATGCAGTAACATGGAAGCTGAGTACGACTCTACGGGTAAATCTCGCAGCA GGAGTTTCTTGTGTCATGGGATCTTGGGGATGCAATCGTTCTCTTGAGTCTTGTGTTCAGCATATATTGTCGAGAGACGGAAGTCGCTTACAGAGAGAGC TGGCAACTATAATGGTGACGAGGCATGGACATGCAGCATCGACCAGACGAATTCTGAGCAAACGGTTCTACATGGAGACTGTTTTTGATGACTCAAGCCC GCACGAAGTTAATCTTAGGTGGCGCTACCGAATGCACTCTGGGATTGTTATTCCTAATGATGGACAGCATTCTGGTGATCCAAAGCCACATGACAATGAC TACAATAAGAATTCTCAGGCAGAGTCTGACACTAAGACAGTTGATCTGAAGCCAAAGCAAGTTGATGCAAGTCCACGAATGACAAACTCAAAATCTCATC ATGCTGACATAACAGAAGACCCTATTGATAGCCTCTTCGGGGCGGTGGCACCACTGGAGGAGATCCAGCACCCTGCTACTCCTGCTCCTGCTCCTGCTAC CAGAGCTCAACATCGCAGTCATAGAAGATCTCATCGTGCTAGGCGTAGAATGCGCCATCATGAAGCTCTCCTGTGA
AA sequence Show only first row Show all	>Lus10010563 pacid=23156685 polypeptide=Lus10010563 locus=Lus10010563.g ID=Lus10010563.BGIv1.0 annot-version=v1.0 MGAALLELEHSLRSQKEYLTSQEAGLLQVCRSNALRALTFFSLVGASTAWGASQTQQDGKVEAVIHYLILCSASTSFLMFSCLHAVTWKLSTTLRVNLAA GVSCVMGSWGCNRSLESCVQHILSRDGSRLQRELATIMVTRHGHAASTRRILSKRFYMETVFDDSSPHEVNLRWRYRMHSGIVIPNDGQHSGDPKPHDND YNKNSQAESDTKTVDLKPKQVDASPRMTNSKSHHADITEDPIDSLFGAVAPLEEIQHPATPAPAPATRAQHRSHRRSHRARRRMRHHEALL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05430			unknown protein		Lus10010563 [exp]	0	1
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	5.8	0.7674
AT3G42150			unknown protein		Lus10011614 [exp]	6.5	0.7294
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	14.8	0.7312
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	15.8	0.7462
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10031432 [exp]	21.5	0.7352
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10006797 [exp]	26.7	0.7062
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10029059 [exp]	26.9	0.7224
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10034351 [exp]	29.6	0.6095
AT5G49540			Rab5-interacting family protei...		Lus10016182 [exp]	29.8	0.6742
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	33.9	0.7164

Compare expression of checked genes

Lus10010563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.