Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32040 640 / 0 Major facilitator superfamily protein (.1) AT1G79710 176 / 3e-48 Major facilitator superfamily protein (.1) AT5G54860 159 / 2e-42 Major facilitator superfamily protein (.1) AT5G25050 159 / 2e-42 Major facilitator superfamily protein (.1) AT5G25040 147 / 6e-38 Major facilitator superfamily protein (.1.2.3) AT5G10820 134 / 2e-33 Major facilitator superfamily protein (.1) AT1G64890 103 / 2e-23 Major facilitator superfamily protein (.1) AT1G04570 68 / 9e-12 Major facilitator superfamily protein (.1) AT2G33280 61 / 9e-10 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006106 [exp] 1011 / 0 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10026893 [exp] 178 / 3e-49 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 174 / 9e-48 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 171 / 2e-46 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 169 / 8e-46 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10026890 [exp] 153 / 1e-39 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 134 / 2e-33 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10024529 [exp] 83 / 9e-17 AT1G64890 355 / 2e-120 Major facilitator superfamily protein (.1) Lus10023708 [exp] 62 / 5e-10 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085900 [exp] 677 / 0 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 177 / 8e-49 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 162 / 3e-43 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 160 / 1e-42 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017100 [exp] 158 / 6e-42 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 144 / 6e-37 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017400 [exp] 135 / 2e-33 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 112 / 2e-26 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1) Potri.013G076300 [exp] 106 / 2e-24 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 103 / 4e-23 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03092 [flax] [poplar] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Lus10010565 pacid=23156699 polypeptide=Lus10010565 locus=Lus10010565.g ID=Lus10010565.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTTCTTGTTCGTTTGCAACAATTTCAGCAAGCTGGATCTTACCTTCACAATCCCTGCTAAATTTGTCTTTCCCTTCCACATCCTCTTCTT CCTCCTCCTGCTGTTATCGCTTCCACGCTCATTCTAAGTCTCTTCCTGGGATAGCACTTCGTCAAACTCGACGGAGGGCGCGCCGGAGACCTCCCGAGAA GCAGGACATGTCTTCCATCCCTATGACCGCTCCGGCTCATCGCCGCGACAAAAGCGACGAACCTTTTCTCAATTCTATAAATAGGTCTGGTAAAGGGGAA ATTCTAACTACAGAACCCGAGTTACAAGAAACTTCCACAAAGAATGTTCCACGTAAGAGTGTGTATAATGGCAGCAGAATCAAATGCTTTGGGGTGGAGT TGTCTCCGGATAATATTGCAGTTGCAATGGTGTACTTTGTCCAAGGTGTTCTTGGCCTTTCCAGGCTTGCTGTCAGTTTTTACTTGAAAGATGATCTGCA TTTGGATCCTGCAGAGACAGCTGTGATATCCGGCTTCTCAGCATTGCCATGGCTTGTTAAACCTCTTTATGGATTTATCAGTGATTCTGTTCCACTTTTT GGTTATCGGAGAAGGTCTTATTTGGTCCTTTCAGGCCTACTTGGTGCACTTTCTTGGAGTTTGATGGCTATCTTGGTTGACGACAAATATGGCGCTTGTC TCTGTATACTTCTAGGGTCCCTTTCAGTTGCTTTCTCTGATGTTGTAGGTATCTTCAGCTTTTTAAAGGTGGAATTGTTGAATAGTTCTCAAAGTAGAAC AGTTGTGGATTCCATGGTTGTCGAGAGAGCTCGTGGTGAGTCACAAAGCACGTCAGGATCTCTTCAATCCTTATGTTGGGGTTCTTCAGCTTTTGGGGGA ATTGTTAGTTCCTACTTTAGTGGTTCACTGGTAGATGCTTATGGTGTAAGGTTTGTTTTTGGCGTCACAGCTCTCCTACCACTGTTAACATCCGCTGTTG CTGTCCTTGTGAAAGAACAACCGGTACATGTTTCTTCCCGGGGAAATAATCTTGCTCTTGCCGGTCCTGGGTTTCTGGAAAACTCAAAGCATCATGTTAT TCAGTTGTGGGGTGCTATTAAGCAACCCAATGTATTTCTTCCCACGTTGTTCATCTTCCTGTGGCAGTCAACACCACATTCGGACTCGGCCATGTTTTAC TTCACCACAAACAAACTTGGTTTTACCCCGGAATTTCTTGGGCGCGTGAAGCTTGTTACATCAGTTGCTTCATTGGCCGGGGTGGGACTGTATAATGGAT TTCTGAAGAACGTCAGCTTCCGCAAGATATTTCTTGGAACAACCATAATTGGCACAGCTCTTGGAATGACTCAGGTGCTTCTGGTAACAGGGTTCAATAG GAAATTGGGAATCAGTGATGAGTGGTTTGCAATCGGAGATTCCCTAATTCTAACAGTCCTCGGTCAGGCTTCTTTCATGCCCGTTCTCGTGCTAGCTGCG AAACTATGTCCAGAAGGAATGGAAGCAACACTGTTTGCAACTCTAATGTCCGTATCAAACGGAGGAAGTGTCCTGGGAGGGCTGGTTGGCGCTTTCCTCA CACAGGTTTTCGGGGTGACTAGGGACAGTTTCGACAACTTGGCGGCACTGGTCATCCTCTGCAATCTCAGCTCGCTCTTGCCTTTACCATTCATTGGCCT CCTCCCCGATGATACAGCTGATTCCACTTCAAAGGAAACTGACGACATAGAGATGAAATCCAATTGA
AA sequence Show only first row Show all	>Lus10010565 pacid=23156699 polypeptide=Lus10010565 locus=Lus10010565.g ID=Lus10010565.BGIv1.0 annot-version=v1.0 MASPSCSFATISASWILPSQSLLNLSFPSTSSSSSSCCYRFHAHSKSLPGIALRQTRRRARRRPPEKQDMSSIPMTAPAHRRDKSDEPFLNSINRSGKGE ILTTEPELQETSTKNVPRKSVYNGSRIKCFGVELSPDNIAVAMVYFVQGVLGLSRLAVSFYLKDDLHLDPAETAVISGFSALPWLVKPLYGFISDSVPLF GYRRRSYLVLSGLLGALSWSLMAILVDDKYGACLCILLGSLSVAFSDVVGIFSFLKVELLNSSQSRTVVDSMVVERARGESQSTSGSLQSLCWGSSAFGG IVSSYFSGSLVDAYGVRFVFGVTALLPLLTSAVAVLVKEQPVHVSSRGNNLALAGPGFLENSKHHVIQLWGAIKQPNVFLPTLFIFLWQSTPHSDSAMFY FTTNKLGFTPEFLGRVKLVTSVASLAGVGLYNGFLKNVSFRKIFLGTTIIGTALGMTQVLLVTGFNRKLGISDEWFAIGDSLILTVLGQASFMPVLVLAA KLCPEGMEATLFATLMSVSNGGSVLGGLVGAFLTQVFGVTRDSFDNLAALVILCNLSSLLPLPFIGLLPDDTADSTSKETDDIEMKSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32040			Major facilitator superfamily ...		Lus10010565 [exp]	0	1
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	15.2	0.7918
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	19.8	0.7774
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10005039 [exp]	33.0	0.7678
AT1G78060			Glycosyl hydrolase family prot...		Lus10022374 [exp]	35.6	0.7597
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	43.1	0.7531
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10035770 [exp]	46.4	0.7476
AT5G08340			Nucleotidylyl transferase supe...		Lus10007496 [exp]	47.6	0.7246
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10000218 [exp]	59.0	0.7438
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014039 [exp]	59.5	0.7418
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10014840 [exp]	61.2	0.7279

Compare expression of checked genes

Lus10010565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.