Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62990 478 / 4e-166 EMB1692 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 209 / 4e-61 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 129 / 9e-33 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 115 / 1e-27 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 109 / 9e-26 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G08940 107 / 3e-25 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 105 / 1e-24 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G06440 104 / 2e-24 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 102 / 2e-23 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 100 / 7e-23 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006104 [exp] 362 / 3e-124 AT5G62990 197 / 3e-60 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005945 [exp] 221 / 1e-65 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 219 / 6e-65 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10008711 [exp] 125 / 2e-31 AT4G08940 538 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 125 / 3e-31 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 112 / 1e-26 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000847 [exp] 107 / 2e-25 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10035074 [exp] 108 / 5e-25 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10011327 [exp] 107 / 5e-25 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G233900 [exp] 533 / 0 AT5G62990 498 / 6e-174 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 216 / 4e-64 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 216 / 6e-64 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 127 / 5e-32 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 115 / 3e-27 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G097900 [exp] 109 / 7e-26 AT4G08940 492 / 2e-174 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 107 / 4e-25 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.015G141700 [exp] 103 / 1e-23 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 102 / 2e-23 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 102 / 3e-23 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10010567 pacid=23156662 polypeptide=Lus10010567 locus=Lus10010567.g ID=Lus10010567.BGIv1.0 annot-version=v1.0 ATGAGAATGGCAGTTACGCTGTTTGTTCCCTCCCAAACTGATTGTTTCCTCTGGCACTCTAGTTTCCTGCCTCCGGTCCTCTTTAGGAAATCAGGGATTC AATTACCAACCCTACGGAAAAGGAGCAATCCGTCTCTTTCAATTTCCTGTGCGGCCCCCAAAATTGTTCGAAGCCGGCCTCTTGACAAGCTAGTTGTGAA GCAGAACAGCATACGCTTTGTTCTAAAGCTTAGAACCCTACTGTTATCCAAACCAAGACACTATCTCCCTCTACACATCCTCGCCAAATGCCGTTCTTAT CTTTGTCTACCAGACCGGCGTTCCATTAGAAGCATGATTCATAGATATCCTTCTTTGTTCGAGTTCTTTGCTATGCCTACACCACCATCTCCATTCAACG CAACCAAACCCTACTATCAGATGTGTGTACGTTTAACCCCAGCAGCAGAAGCCCTTGCTGTTGAAGAATCCCAGCTCCAATCTGCAATTTCCACCAAACT GGCACATAAGCTCCAGAAGCTTTTAATGCTAGCTTCTCATCGCAGGCTGGCTTTAACAAAATTGGTTCACCTTGCTCCTGATCTCGGCCTCCCTCCAAAC TTCCGGTCTCGCCTCTGCAATGACCACCCGGATAAGTTCAAGATAGTTGAGACCTCTTACGGTCTTGTTCTAGAGCTTGTGTCTTGGGATGAGCAGTTAG CTGTTCCTATACCTCCTCATGTTGTTTCTCGCGATTTGATAGTGGATAGGCCTTTGAAATTCAAGAGATTGCAGCTTAGGAAGGGGCTGAATCTTAAGAG GCGTCACGAGGGTTTTCTGATAAAGTTTTCGGAGCTTCCGGATGTGTGTCCTTATAACACCATGATAGAGGAGTTGAGTAAAGAATCCTTGGAAGCTGAG AAGAGGGCATGTGCTCTGGTGAGGGAGGTGCTGGGATTGACTGCTGAGAAGAGAACTTTGATAGATCATTTGACGCATTTCAGGAAGGAATTCGGGCTGC CTAACAAGTTGAAGGATCTGATTTTACGCCACCCGGAGATGTTCTACGTTAGCTTGAAAGGTGTAAGGCTTTCTGTTTTCCTTGTCGAGGGTTTCAATGA CAAAGGTAAACTCTTTGTGAAAGATGATACGTCTGTCATCAAAGATAAGTTGATGCGTTTGGTGAGGGAATCGAAAAGAATGAGACAAGAGAGGCGCAAG GCTGCGATGAACAGAGGTGTTGATGGAGTTGCTCCTAATGATGTTGGCAGTGATGATGTATCTCATGATGTCGATGATGACGAGTATGATGATGGTTTCG AGAATATTTTTGAGGATTCAGACCTTGAAGATTTTGATGTCGACTCCATTGAAGACGGTGAGTTTTGGGGCAATAGAGAGAACACGGAGTTTTGGGCTGC TGATGGTTCCTTTGTTCCTCAAGAGGGATTAGTACCTCCTCCAGAACCATGGTAG
AA sequence Show only first row Show all	>Lus10010567 pacid=23156662 polypeptide=Lus10010567 locus=Lus10010567.g ID=Lus10010567.BGIv1.0 annot-version=v1.0 MRMAVTLFVPSQTDCFLWHSSFLPPVLFRKSGIQLPTLRKRSNPSLSISCAAPKIVRSRPLDKLVVKQNSIRFVLKLRTLLLSKPRHYLPLHILAKCRSY LCLPDRRSIRSMIHRYPSLFEFFAMPTPPSPFNATKPYYQMCVRLTPAAEALAVEESQLQSAISTKLAHKLQKLLMLASHRRLALTKLVHLAPDLGLPPN FRSRLCNDHPDKFKIVETSYGLVLELVSWDEQLAVPIPPHVVSRDLIVDRPLKFKRLQLRKGLNLKRRHEGFLIKFSELPDVCPYNTMIEELSKESLEAE KRACALVREVLGLTAEKRTLIDHLTHFRKEFGLPNKLKDLILRHPEMFYVSLKGVRLSVFLVEGFNDKGKLFVKDDTSVIKDKLMRLVRESKRMRQERRK AAMNRGVDGVAPNDVGSDDVSHDVDDDEYDDGFENIFEDSDLEDFDVDSIEDGEFWGNRENTEFWAADGSFVPQEGLVPPPEPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Lus10010567 [exp]	0	1
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10027400 [exp]	3.7	0.8509
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10014493 [exp]	6.2	0.8449
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	11.9	0.8410
AT2G46940			unknown protein		Lus10007198 [exp]	12.0	0.7922
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	13.6	0.8387
AT1G62870			unknown protein		Lus10004325 [exp]	14.3	0.8243
AT1G12330			unknown protein		Lus10028918 [exp]	16.6	0.7953
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10022797 [exp]	17.0	0.8144
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10031665 [exp]	17.9	0.8100
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	18.5	0.8226

Compare expression of checked genes

Lus10010567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.