Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22590 493 / 2e-174 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041198 [exp] 576 / 0 AT3G22590 547 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10021913 [exp] 536 / 0 AT3G22590 516 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10039347 [exp] 337 / 8e-117 AT3G22590 295 / 2e-100 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10026680 [exp] 115 / 5e-30 AT3G22590 63 / 1e-11 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085500 [exp] 513 / 0 AT3G22590 555 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Potri.008G155000 [exp] 353 / 5e-122 AT3G22590 385 / 3e-134 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05179 [flax] [poplar] CDC73_C RNA pol II accessory factor, Cdc73 family, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10010571 pacid=23156674 polypeptide=Lus10010571 locus=Lus10010571.g ID=Lus10010571.BGIv1.0 annot-version=v1.0 ATGGATTCTCTTTCAGCTCTCCGTGAATACACGATGCGAGGCGAACTGAGCAAGATCGTCCGAGTAAACGCCGACTTCCGCTTCGGCTCCGAGTACTCCT TCCCCTGCGCCGCCGAGATTGGCTACCGCTCTAACAAAGGTAACCTCTTCACCCTCGAAACGCTCGTCTATTTCATCCAGAACGCGCATCTCAAGCACAC GGACTACCTCCAGAGCTGTCTCGCCTATGGCGTCCCAACAATCACGTATGTCGAACGGAAGCAGCTTCTCGACTACCTAACGGGGAAGATCTCCAATTCG GACTCTGTAATTTTCCCGCCGTTAAATCAGCAGCAGCCTGAGCAGGATCAACAAAACCCCAATTCGGCTACAAATCTAGGTGACGAATGTTACCGTCCTG AAGATGGCGCTCTTTTCGATTCTATTAACAATGCCGGCGCTATGGACACTGCAGATTATATGTCTCTTATCTCCTCGACGGAGAAGCCGTTGAAGGATCG GGAATCGTTGTTGGAGTGTAAGAACGAGGATTTGTACAGCGTGTTGGTCTCTTCCACTCGGCGGCAAGAAGAACGACAGCAGATTGAATCCCAGCAGAGG AAAGATGGGTTGGGGTTGAAGAGTAGATTGACCGGAGCTGATGACGGAAGAGTCGGATATGGTCATGATATGCCGAAAATCAGAGGGAAAACTGGGGAAG GAGTGCCTATAATTTTAGTTCCGAGCGCATTCCAGACTTTGATTACGATTTACAATGTGAAGGACTTTCTGGAGGATGGGGTTTACATACCTGCAGATGT GAAGGTGAAACAGATGAAAGGGGCGAAGCCCGAATGCGTGACTGTGCATAAGAAGTTGAATACTGATAGGAACAGAGTGATGACTGCTTATGAAGTGAGG GATAAACCTACTGCACTCAAGCCTGATGATTGGGACAGAGTTGTAGCTGTTTTTGTGTTGGGGAAGGAGTGGCAGTTCAAGGATTGGCCTTTCAAGGATC ATTTGGAGATATTTAATAACATTATTGGGTTCTTTATGCGGTTTGAAGATGACAGCATAGATTCTGCGAAGACTGTTAAACAATGGAATGTAAATATTAT CTCGATAAGTAAGAACAAGCGGCATCAGGACCGGGCTGCTGCATTGGAGGTGTGGGAAACGCTAGAAGAATTTGTGCGCTCGCGCTCACATGCTTGA
AA sequence Show only first row Show all	>Lus10010571 pacid=23156674 polypeptide=Lus10010571 locus=Lus10010571.g ID=Lus10010571.BGIv1.0 annot-version=v1.0 MDSLSALREYTMRGELSKIVRVNADFRFGSEYSFPCAAEIGYRSNKGNLFTLETLVYFIQNAHLKHTDYLQSCLAYGVPTITYVERKQLLDYLTGKISNS DSVIFPPLNQQQPEQDQQNPNSATNLGDECYRPEDGALFDSINNAGAMDTADYMSLISSTEKPLKDRESLLECKNEDLYSVLVSSTRRQEERQQIESQQR KDGLGLKSRLTGADDGRVGYGHDMPKIRGKTGEGVPIILVPSAFQTLITIYNVKDFLEDGVYIPADVKVKQMKGAKPECVTVHKKLNTDRNRVMTAYEVR DKPTALKPDDWDRVVAVFVLGKEWQFKDWPFKDHLEIFNNIIGFFMRFEDDSIDSAKTVKQWNVNIISISKNKRHQDRAAALEVWETLEEFVRSRSHA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10010571 [exp]	0	1
AT1G52260		ATPDI3, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10035870 [exp]	4.6	0.7757
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	8.0	0.8159
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	9.7	0.8312
AT5G57160		ATLIG4	DNA ligase IV (.1)		Lus10020013 [exp]	14.9	0.7601
AT1G48490			Protein kinase superfamily pro...		Lus10031906 [exp]	15.2	0.8217
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	15.6	0.8209
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10024645 [exp]	17.5	0.7511
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10042409 [exp]	20.1	0.8147
					Lus10021411 [exp]	26.7	0.7935
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10016830 [exp]	27.5	0.7898

Compare expression of checked genes

Lus10010571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.