Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14805 88 / 3e-21 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021910 [exp] 141 / 2e-41 AT4G14805 81 / 3e-18 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10039350 [exp] 50 / 1e-07 ND / Lus10032488 [exp] 43 / 4e-05 AT1G73890 84 / 2e-20 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10042984 [exp] 43 / 5e-05 AT1G73890 81 / 3e-19 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085000 [exp] 106 / 1e-28 AT4G14805 105 / 3e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.008G155300 [exp] 79 / 9e-19 AT4G14805 59 / 2e-11 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.010G085200 [exp] 40 / 0.0008 AT1G05450 134 / 2e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010576 pacid=23156677 polypeptide=Lus10010576 locus=Lus10010576.g ID=Lus10010576.BGIv1.0 annot-version=v1.0 ATGACTCCCACTTTCCTGCTGATCTCCATCTCCGCTCTGTTCCTAACAGCCACCGTCGGGGGCGCCTCTAAAAACACCGTCGGTGCTCCATCAACACCGT CGCCAGAAGCCTGTGTCGCCGATCTGGTGGCTTTCTCCCCCTGTTTCGGATATGTTTTGGCACCACCAAACAACGTCATGGACGGAGTCAATCCTCAGTG CTGCAAAGCCGTGACGGAGGCCTTTGGTTCCGGTGGAAGTAACTGCTTCTGCCATCTGGTCAAGCAGCCGCTACTCTTTGGATTCCCGTTGAACCAAACC AAGATCGCTTATCTTCCCTCTCTCTGCTCCAATCGGAAATCGAAGAATGCGACCTCTGGGATGGCTAACTTCCACTCCCTGGAGACTCTGTGTGCAGGTT TGCCTCCTCCTCCAAGCTCACCGAGTTTAGTAGGAGCGCCGACGTCATCTGATTCTGGTGCTCATAATACGACACTTGCTGCACCAGAACCACCTGCTAA AGCTGGTAAACCTGCCCCTGATGCATCATCTACACCAAGTCCCTCAGATGCATATGCTCAAGTCTCATCGCCACCAGCTTCTTCAATGGCAGCAAAATTG AGCTCAATACCCACTTGGTTTTTCCACGGAGCTGCCCTTCAATTGCTATTATCGCTCGTTTGA
AA sequence Show only first row Show all	>Lus10010576 pacid=23156677 polypeptide=Lus10010576 locus=Lus10010576.g ID=Lus10010576.BGIv1.0 annot-version=v1.0 MTPTFLLISISALFLTATVGGASKNTVGAPSTPSPEACVADLVAFSPCFGYVLAPPNNVMDGVNPQCCKAVTEAFGSGGSNCFCHLVKQPLLFGFPLNQT KIAYLPSLCSNRKSKNATSGMANFHSLETLCAGLPPPPSSPSLVGAPTSSDSGAHNTTLAAPEPPAKAGKPAPDASSTPSPSDAYAQVSSPPASSMAAKL SSIPTWFFHGAALQLLLSLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14805			Bifunctional inhibitor/lipid-t...		Lus10010576 [exp]	0	1
AT5G52390			PAR1 protein (.1)		Lus10040702 [exp]	3.0	0.7003
AT4G35620		CYCB2;2	Cyclin B2;2 (.1)		Lus10041092 [exp]	8.2	0.6210
AT4G02610			Aldolase-type TIM barrel famil...		Lus10014725 [exp]	10.5	0.5971
					Lus10000761 [exp]	16.0	0.5736
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002517 [exp]	28.5	0.5944
AT1G63320			Pentatricopeptide repeat (PPR)...		Lus10009331 [exp]	29.4	0.5733
					Lus10008904 [exp]	30.1	0.5921
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10003302 [exp]	37.1	0.5879
AT5G59100			Subtilisin-like serine endopep...		Lus10040751 [exp]	50.2	0.5724
AT3G02125			unknown protein		Lus10032983 [exp]	57.8	0.5696

Compare expression of checked genes

Lus10010576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.