Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05460 610 / 0 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03270 61 / 2e-09 DNA-binding protein, putative (.1) AT5G37150 47 / 4e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 44 / 0.0003 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47010 44 / 0.0004 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010175 [exp] 137 / 6e-34 AT1G05460 226 / 4e-63 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017379 [exp] 119 / 6e-28 AT1G05460 212 / 2e-58 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026309 [exp] 65 / 1e-10 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10003024 [exp] 45 / 0.0003 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 45 / 0.0003 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G155400 [exp] 662 / 0 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G047500 [exp] 532 / 1e-179 AT1G05460 1051 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G074070 [exp] 124 / 1e-29 AT1G05460 211 / 2e-57 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G089800 [exp] 124 / 2e-29 AT1G05460 214 / 3e-58 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G054600 [exp] 66 / 7e-11 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.001G148100 [exp] 44 / 0.0004 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.003G086400 [exp] 44 / 0.0004 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04851 [flax] [poplar] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Lus10010577 pacid=23156687 polypeptide=Lus10010577 locus=Lus10010577.g ID=Lus10010577.BGIv1.0 annot-version=v1.0 ATGGGCACAATCGCAGGTAATAAGTGGGAAGACGACGGCGAGTACTCCGTAATCGGCGACAAAGGCGAAATTGGGTACATCGATTACCAGAATGACAAAT CCGTATGCAATTACGACCCCATGGAGGAAGGTCCAGTCATCATCTCCGTCCCATTCCCTATGAAGGACGGGAAGCCCCAGTCGGTTTTCGTCGGAGAAAC TGCCGTCGCTCCCATTACCGTCGAAAACACCACCGACGAAGCCGTCGAACTCTGGACCAAGATATTCGCGTCCACTCCCGAGGAGTCCTTCGTCCTTTCT CTCATGGAGCCGCCGCGAAATGATGCTACTGCCGCAGCCGACGACAGGAGCAACGGGTTTCTCAGTTTTTTCTCTCTGGAGGATCGAATGATTCAGCCTA GTGAGACGTTGACCCTATGGCTATCTTGCAAACCCGTGGAGATCGGAATGTACACTTCCATAGTGCATTTTGATGTGGGTGGTGAAAGGATTGAAAGGGC GGTGTTCATTCTAGCTGAGGATAAAGTATCTCAGTCCCTAGCTTCTAGGATGCCATACTCGAGAACTGTGAAGAAGAATCAGTTCATAGTGAATGAATTT GTCAAGGGCACCAATCCAAGGAGGGCGCCAGGTAGGAAGATGAAGAACAGGCTTCCTCGTTACGATATTCCTAAGGCTACGAGAGAAATGATTCAGAATA AGGAGATACCTGAAGAGGTTACAACAGGTCTACGTAATGAGAATTATGTTTCCTACTTCAAGACTCTCTTGATAATGGAAGAAATACAGTTAGAGGAAGA TATGAGAGCCTATGACATGGAGCGTGTTGCGATGAGGAAGAGAGGCAACTTTCTATCCCTTATGGTACCAGGGCTTGCTGAGCGTAGGCCTTCTCTCGTC CATGGAGATTACATCTTTGCAAAGCCTACACAGTCAGATGAGTCAGTTGTTGCACATCAGGGATTTGTTCACCGTGTTCAAGCCGATGAAGTGTATTTGC AATTCAACGACCAATTTCACTTGAATCACTTGGATGGGAATCTGTATGACGTGCACTTCACTTATAATAGAATCAATTGCAGGAGGATGTATCAAGCTGT TGACAACGCTGGAGCTTTGGAGGCTGATTTCCTATTCCCTTCCGGAAGTAGGCTTATTAAAACCAACCCTCTGATTCCTATAGCAAGTAATATTAACGAG GAGCAGAAGTTTTCTGTAGAGATGATTCTTGGGTGTAGAGGAGGTTCTCCTTATGTCATTCATGGCCCTCCTGGTACAGGTAAGACCATGACAATAATAG AAGCAATACTCCAGCTTTATAGGGGCCGGAGACATGCTCGTATTCTTGTGTGTGCTCCCTCAAATAGTGCAGCAGATCATTTGCTAGGCATGCTTCTCTC AGAGAAGGATGTCAATCTTCGTCAAAATGAGATATTTCGGCTGAATGCAACTGCCCGATCATATGAGGAGGACGAGTACTGGAATATGCTATTATGGCGC TGTGCAGACCATGGCTCTTACAATGGTTGTGCTCTGCCAGAAAGGAAGGATTTAAGTGTTACATATAGAGAGAAGGAGAATGATGGCAACTATGGTGAAG GAAACTATCAGGGATCAGGAGGAGAATGGGGCCAGGCGATTACTCAAGGAGAAGATAATTGGGGCCAGACGAATACTCAAGGAGAAGATGATTGGTGCCA GGCGAATACTCAAGGAGAAGGTGATTGGGATCAGGCGAATACTCAAGGAGAAGGTGATTGGGGCCAGGCGAATACTCAAGGAGAAGGTGATTGGGGACAG GCTCATTTCGGGGTAGAGGATTCTAGAGCCCAAGGTGTATGGGGTCAAGACTCATCTCAGCCCAATAATCAAGTTCCTGGGACTAATGAAGCTGAATGGT CTGATGGCTGGAAGTAA
AA sequence Show only first row Show all	>Lus10010577 pacid=23156687 polypeptide=Lus10010577 locus=Lus10010577.g ID=Lus10010577.BGIv1.0 annot-version=v1.0 MGTIAGNKWEDDGEYSVIGDKGEIGYIDYQNDKSVCNYDPMEEGPVIISVPFPMKDGKPQSVFVGETAVAPITVENTTDEAVELWTKIFASTPEESFVLS LMEPPRNDATAAADDRSNGFLSFFSLEDRMIQPSETLTLWLSCKPVEIGMYTSIVHFDVGGERIERAVFILAEDKVSQSLASRMPYSRTVKKNQFIVNEF VKGTNPRRAPGRKMKNRLPRYDIPKATREMIQNKEIPEEVTTGLRNENYVSYFKTLLIMEEIQLEEDMRAYDMERVAMRKRGNFLSLMVPGLAERRPSLV HGDYIFAKPTQSDESVVAHQGFVHRVQADEVYLQFNDQFHLNHLDGNLYDVHFTYNRINCRRMYQAVDNAGALEADFLFPSGSRLIKTNPLIPIASNINE EQKFSVEMILGCRGGSPYVIHGPPGTGKTMTIIEAILQLYRGRRHARILVCAPSNSAADHLLGMLLSEKDVNLRQNEIFRLNATARSYEEDEYWNMLLWR CADHGSYNGCALPERKDLSVTYREKENDGNYGEGNYQGSGGEWGQAITQGEDNWGQTNTQGEDDWCQANTQGEGDWDQANTQGEGDWGQANTQGEGDWGQ AHFGVEDSRAQGVWGQDSSQPNNQVPGTNEAEWSDGWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	0	1
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10013301 [exp]	2.4	0.9056
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10014931 [exp]	3.2	0.8978
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10039677 [exp]	3.2	0.9236
AT1G48950			C3HC zinc finger-like (.1)		Lus10038947 [exp]	5.0	0.9086
AT1G43770			RING/FYVE/PHD zinc finger supe...		Lus10028603 [exp]	6.0	0.8862
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025168 [exp]	6.1	0.9247
AT1G36990			unknown protein		Lus10029655 [exp]	6.2	0.9114
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10017973 [exp]	7.2	0.8773
AT5G60250			zinc finger (C3HC4-type RING f...		Lus10036127 [exp]	7.9	0.8701
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10029294 [exp]	8.3	0.8802

Compare expression of checked genes

Lus10010577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.