Plant FIBer expression Database

Lus10010578 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G13225 221 / 7e-62 WW domain-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005845
[exp]
967 / 0 AT3G13225 410 / 1e-128 WW domain-containing protein (.1.2)
Lus10010579
[exp]
330 / 2e-105 AT3G13225 249 / 1e-73 WW domain-containing protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G371600
[exp]
333 / 3e-102 AT3G13225 220 / 1e-59 WW domain-containing protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0680 WW PF00397 WW WW domain
Representative CDS sequence
>Lus10010578 pacid=23169667 polypeptide=Lus10010578 locus=Lus10010578.g ID=Lus10010578.BGIv1.0 annot-version=v1.0
ATGGGAAAGAGAAAAGAGTGTCGCCTTGCTGCTTTAGGCAACTCCAATCGCCGCGTTAAGCTCGACCTCTTCGCGGAACCCTCTGGAGACTTGGGTGGCT
CCTCCATACATGATGAAGTTGAAGGGAATGGTGATCCGTTACCCACTTCGCCATCATCTTCAGATCACCAGCCACAAAATCCTCTTCTTTTACTTGGGCA
ATACAGTGATGATGAATTGGACGAAGAGAAAAGTCAGGATCTAAACCATGGAACTAATGACAGTTCGTCAGCTGCTCTTACTACGCAGGATATACATCCT
GCTGAAGGAAATGAAAAGGATAGCAATGGAGTTGTAGAGCCTGCCATCCAATCTGACGAACAGCAGGATATGGATCGGGACTCTATAGCAGTTGATGCTG
CAGAGAGTGTGAAACAAGGTGAAAATAAGGATTCTGATACTACTGCTTATGCTGACACGAGCAAGCCATTAATGTTGGCAGAAAAAGCATCTGTAGGTGG
AGCTTCCACTCCACTAGTTGCCGGAGATGTGATTTTGGGTTGGAAGATGGTGGTACATGACGAGACTAATCAATACTATTACTGGAACACTGAAACTGGT
GAGACTTCATGGGAAGTGCCCATTGCTTTGGCTCTAATGGGATACACGGTGAATCAGCAGACATCTGTTGCTGAAAGTACGAGTCTTCCAGTGAGTGAAA
GCTATAACAATTCAATAGCTAATGTGGGAGGCATTTCTTTCCCAGTATCAACTGTGGATAGCTCGACGGTTGTCAGTTATATTCCTTCTAGTGAAGGGGC
ACATGGCAGTATGCGAGAATTGTATGCATCTTATCAACAGGTTGAAAACGAAACCCTGAAGGATGAAAGTTTTGCAACGCATTCACAACAAAATGAGCTG
GAGAGCAACACCACTTCAGTTCATGCGCAATTGGGTGATGTGAATTCTGTTAAAGACGAGCCTAGTCCAGTTGCAGTATCTTCCCATATCCAGAAAGAAG
GGACTGATACTTCCAGTAGTCTGAGGACTCATTGTCAATGCTTATTGGAGAGGGTGAAGTCCCTTACAGGGTTTGAGAGACCTCCCCAAGATCGTGACCG
GATATTTAAGTATACCTCTGAATTAGAGACTAGACTTTTTGACATCGAGTCTCTTTCATCTTATGGTTTGTCGATGCTCCCATTCTGGATGCATTCTGAA
GGAAGACTTAAACAATTAGAAGATACAATCAACAATGAAGTTTACCAACTTGCGGTATCTGCTCAATTGGATTGTGATTTTGATAAAAGTACCGTTTCCT
GTGAAGGAAAGGGAGAAAAACAAAATGAATTGTTTCGTGGATCTCTATTAGATGGACCAGGAAGCAGTGAGCAAGGTGCTTCTTTTGATGCAAAGGACAG
TTCTCATATTGAATGTGCATCTGGATCTGTTGCATTCGATGTCCATGTCTCCCCTTCTATTGAATCTGCTAAACTCCCGGAAAATGCAACAATGAGGGCA
GAGCGAAATGAGACTGCTGACTTGAAGTCGGACTCAGTCAGCATCGAGGATGTTGATATGGATATTGACATGGAAGTTGAAGATGTACCCAAAAACTCAA
CTACCTGTGGAAATGTTCATCACTCAAACTCTGCTCCAGCTGAGCAATCAATTCCTTCAAATCTACCTGCAGAATTGCCATCCCTTCTAGCTGGGGAATC
ATCAGCTGTTTCTCCTCCAGAAGAAGAATGGATTCCTCCTCCACCGCCTGATACTGAACTTGTTCCTCCACCTCCTCCTGATGATGACTTTGTTCCTCCA
CTGCCTCTTGATGAGCCTCCTGATTCCTCCTATTCCATGCTTCCCTGCTCTGTTTTGTCAGCTATAGTAGGATGGAAGAGAAGTGACACCCACTGCCATT
TACTGCATATCCATTGA
AA sequence
>Lus10010578 pacid=23169667 polypeptide=Lus10010578 locus=Lus10010578.g ID=Lus10010578.BGIv1.0 annot-version=v1.0
MGKRKECRLAALGNSNRRVKLDLFAEPSGDLGGSSIHDEVEGNGDPLPTSPSSSDHQPQNPLLLLGQYSDDELDEEKSQDLNHGTNDSSSAALTTQDIHP
AEGNEKDSNGVVEPAIQSDEQQDMDRDSIAVDAAESVKQGENKDSDTTAYADTSKPLMLAEKASVGGASTPLVAGDVILGWKMVVHDETNQYYYWNTETG
ETSWEVPIALALMGYTVNQQTSVAESTSLPVSESYNNSIANVGGISFPVSTVDSSTVVSYIPSSEGAHGSMRELYASYQQVENETLKDESFATHSQQNEL
ESNTTSVHAQLGDVNSVKDEPSPVAVSSHIQKEGTDTSSSLRTHCQCLLERVKSLTGFERPPQDRDRIFKYTSELETRLFDIESLSSYGLSMLPFWMHSE
GRLKQLEDTINNEVYQLAVSAQLDCDFDKSTVSCEGKGEKQNELFRGSLLDGPGSSEQGASFDAKDSSHIECASGSVAFDVHVSPSIESAKLPENATMRA
ERNETADLKSDSVSIEDVDMDIDMEVEDVPKNSTTCGNVHHSNSAPAEQSIPSNLPAELPSLLAGESSAVSPPEEEWIPPPPPDTELVPPPPPDDDFVPP
LPLDEPPDSSYSMLPCSVLSAIVGWKRSDTHCHLLHIH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G13225 WW domain-containing protein (... Lus10010578
[exp]
0 1
AT3G24870 Helicase/SANT-associated, DNA ... Lus10011850
[exp]
5.5 0.9195
AT3G24870 Helicase/SANT-associated, DNA ... Lus10022788
[exp]
6.9 0.9288
AT5G07940 unknown protein Lus10021162
[exp]
9.5 0.9177
AT3G57300 ATINO80 INO80 ortholog (.1.2) Lus10031050
[exp]
9.8 0.9148
AT1G02080 transcription regulators (.1.2... Lus10024660
[exp]
12.2 0.9267
AT1G77800 PHD finger family protein (.1.... Lus10024777
[exp]
16.0 0.9257
AT4G00450 CCT, CRP CRYPTIC PRECOCIOUS, CENTER CIT... Lus10014778
[exp]
17.8 0.9247
AT3G61690 nucleotidyltransferases (.1) Lus10030266
[exp]
19.1 0.9224
AT3G61740 SDG14, ATX3 SET domain protein 14 (.1.2) Lus10012626
[exp]
23.9 0.8582
AT3G61690 nucleotidyltransferases (.1) Lus10004019
[exp]
26.8 0.9027

Lus10010578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.