Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13225 165 / 2e-43 WW domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005845 [exp] 785 / 0 AT3G13225 410 / 1e-128 WW domain-containing protein (.1.2) Lus10010578 [exp] 333 / 8e-107 AT3G13225 231 / 3e-65 WW domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G371600 [exp] 216 / 2e-60 AT3G13225 220 / 1e-59 WW domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain
Representative CDS sequence Show only first row Show all	>Lus10010579 pacid=23169662 polypeptide=Lus10010579 locus=Lus10010579.g ID=Lus10010579.BGIv1.0 annot-version=v1.0 ATGCTCCCATTCTGGATGCATTCTGAAGGAAGACTTAAACAATTAGAAGATACAATCAACAATGAAGTTTACCAACTTGCGGTATCTGCTCAATTGGATT GTGATTTTGATAAAAGTACCGTTTCCTGTGAAGGAAAGGGAGAAAAACAAAATGAATTGTTTCGTGGATCTCTATTAGATGGACCAGGAAGCAGTGAGCA AGGTGCTTCTTTTGATGCAAAGGACAGTTCTCATATTGAATGTGCATCTGGATCTGTTGCATTCGATGTCCATGTCTCCCCTTCTATTGAATCTGCTAAA CTCCCGGAAAATGCAACAATGAGGGCAGAGCGAAATGAGACTGCTGACTTGAAGTCGGACTCAGTCAGCATCGAGGATGTTGATATGGATATTGACATGG AAGTTGAAGATGTACCCAAAAACTCAACTACCTGTGGAAATGTTCATCACTCAAACTCTGCTCCAGCTGAGCAATCAATTCCTTCAAATCTACCTGCAGA ATTGCCATCCCTTCTAGCTGGGGAATCATCAGCTGTTTCTCCTCCAGAAGAAGAATGGATTCCTCCTCCACCGCCTGATACTGAACTTGTTCCTCCACCT CCTCCTGATGATGACTTTGTTCCTCCACTGCCTCTTGATGAGCCTCCTGATTCCTCCTATTCCATGCTTCCCTGCTCTGGACAGATGGTTCAACCTATGT CTTATACTGAACACTACGGTTTTGCTTATGTGGATCCTAGTTCCCAATATTACTGCTCTGCTGCTACTTTTCCAAGTGGCTTTGTACATAGTGATGGAAG TCAAGCTGCCATACCACAAACATCACTATATTATGGGTCTGTTTCAACCACGTACTCTGAAACATCACCTGTTGAGCAAGTAGCATCTTATGACCTCCAA ACAGTGCCTCCTGGAACTCTTGTTACAGGGTTAGAGTCTTCAAATTTGCCAACTAATTTTGGGACGGTGCAATCTGATTCCAGTCATGGTCTCTATACCA CCAGATCAGTAAACGCAGGATCACATCTGAAGCCCGAGTCTTTAGTTGCTGGTATTCAAATTGATTCAGGGCACGTACACCCTTCTTCCAGCATGAACAA TCAAGCTCCTGATCTAAGCAGTAATAAAGGGACTGTATCTGCAGCTGCCTTTGCCCTTTCATCAAATGCCAAGGTCCAATCTAAAGTTTCTCGTGGTAAG AAGCGGACTGTTGCTGTTGCAACCTCCTTGAGATCTAATAAGAAAGTGTCAAGTTTGGTTGACAAGTGGAAAGCAGTGAAAGAGGAGATGCATGAAGACG AGGAAGATGAACCGGAAAATGCACTTGAGATCTTGGAGAAGAAACGGAAAAAAGAAATTGAGGAATGGCGTGCTAAGCAAATTAGTACTGGAGAGGCAAA AGATAATGCAAATTTTCAACCTCTGGGTGGTGATTGGCGTGAGAAAGTGAAGCGGAGGCGGGCGCTTGCAGCCAAAGAAGATGGCAAAAAACAGCCCGAG GCAGGCGATGATGCAAAGCCAAAGAAACCTGACTTAGCACAACTTTCGAGGGGGCTACCTTCTGGTTGGCAGGTGTATTGGGATGAAGCAACGAAGCAGG TTTATTATGGGAATGCAGTTACTTCGGAGACGTCCTGGACCAGACCACCCAAATCATAA
AA sequence Show only first row Show all	>Lus10010579 pacid=23169662 polypeptide=Lus10010579 locus=Lus10010579.g ID=Lus10010579.BGIv1.0 annot-version=v1.0 MLPFWMHSEGRLKQLEDTINNEVYQLAVSAQLDCDFDKSTVSCEGKGEKQNELFRGSLLDGPGSSEQGASFDAKDSSHIECASGSVAFDVHVSPSIESAK LPENATMRAERNETADLKSDSVSIEDVDMDIDMEVEDVPKNSTTCGNVHHSNSAPAEQSIPSNLPAELPSLLAGESSAVSPPEEEWIPPPPPDTELVPPP PPDDDFVPPLPLDEPPDSSYSMLPCSGQMVQPMSYTEHYGFAYVDPSSQYYCSAATFPSGFVHSDGSQAAIPQTSLYYGSVSTTYSETSPVEQVASYDLQ TVPPGTLVTGLESSNLPTNFGTVQSDSSHGLYTTRSVNAGSHLKPESLVAGIQIDSGHVHPSSSMNNQAPDLSSNKGTVSAAAFALSSNAKVQSKVSRGK KRTVAVATSLRSNKKVSSLVDKWKAVKEEMHEDEEDEPENALEILEKKRKKEIEEWRAKQISTGEAKDNANFQPLGGDWREKVKRRRALAAKEDGKKQPE AGDDAKPKKPDLAQLSRGLPSGWQVYWDEATKQVYYGNAVTSETSWTRPPKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13225			WW domain-containing protein (...		Lus10010579 [exp]	0	1
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	1.0	0.8028
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10005193 [exp]	3.2	0.7700
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10016778 [exp]	4.2	0.7287
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10006368 [exp]	6.5	0.6830
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	12.2	0.7593
AT5G43680			unknown protein		Lus10004356 [exp]	18.6	0.7318
AT5G03450			Transducin/WD40 repeat-like su...		Lus10026534 [exp]	19.8	0.7212
AT1G15780			unknown protein		Lus10025450 [exp]	20.8	0.6898
AT3G20430			unknown protein		Lus10007452 [exp]	21.2	0.6701
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030898 [exp]	23.4	0.6507

Compare expression of checked genes

Lus10010579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.