Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59910 885 / 0 Ankyrin repeat family protein (.1) AT2G44090 865 / 0 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005306 [exp] 1238 / 0 AT3G59910 877 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G146500 [exp] 1000 / 0 AT3G59910 847 / 0.0 Ankyrin repeat family protein (.1) Potri.017G001300 [exp] 998 / 0 AT3G59910 860 / 0.0 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010581 pacid=23169664 polypeptide=Lus10010581 locus=Lus10010581.g ID=Lus10010581.BGIv1.0 annot-version=v1.0 ATGGCGTTTGTTGGAAGTACTCATACCCCCATCATGCAGGGGCTTAACCCTGATGAATCATTCTGTGGTGAAATGGAAACAGACGATTTTGAATCTCCAA ACCCAAACAATGAGATTCAATGTTTCACGTCAGAGAGGGGTGAGGGAAGTAATGTGGTTTTCTCAAGAGAAGCACCGCTTGTGAGTAAAGAGTCAAGAAG GCCAATCCATTGTAGTTGTAGCTCGAAAAAGCTTAAATCACGGATGGTTGGAGCTGAATCTGAGGGCATCAAGGATAGTGTTGGAAATGAGAAGAAATTT AGCCGACAAGATAGAATGGAGTGGGGCAGATTATTTCAAGGTGCTGTTAGTTCTCATGACTGGGAGCTAGCTGAGAGCCTGATATTATTAGCAGATCCGC ATACCCTTAATGATGCTTTATGTATCACACTTGATTCTATTTGGTTCTTAAGCACTGAACAAGAGCTCCATGGAATTACGGGGTTAGTCAAGAAGATTAT AGCTAATGGTGCTGATGACTTTACTAGAGCTGCTTTGAGGACGTCGTTTCTTGCTTCTTGTGTTTCAGCTTGCCAGAGCCATACAATGAGTCTTGCTGAT ACAGTTACTGTCATGGCGCAAAGGCTGCATGAGCGGCTCCAGGACTGCAATGGCGATGAAGTCTTGAAGGCAGAAGCTGGTGCAAAGGTTCAAAAGTTCA CTGAGTGGGCCTTGAAATGTATTGGGTTTCATTCTCGTTGCCAGGGAAGTAGGGGTAGAGTTAATCACAGCTCAACTGTTGAGATTCAACTCCAGTTATC AGCTTTCAAGGTGTTTCTAGATCTTGCTGGCAATCAACTCACAGGAAAGGATTTTACAGAGGCATTTGATGCTGCCTGTTTTCCGCTTACTTTGTTCTCA AGTTCATTTGACCCTGGCTGGGCATCTGGGATATCAGCTACTGCAATCCAAGGGTTGTTGGGAATGTTAGTTGAAGGTGGTGCTGACAATGTTAACCAGT GTTTTCTTGAAGCTTCCCGTTTTGGAAGTACAGAACTGGTCCGTATCTTGCTACAGATTGCACAGAGGAACAGCTTGGATGTTGATGTGGATCTGGCCCT TGGGTTTGCTGCCCACTATGGTAAAATTGACACAATGGAGTGCTTGGTGGAAGAGGGGAATGCCATAACTTTTTTGGGACCATTGATGAGAGCAGCAGAG AGGGGGTGTATGCAGGTTGTGCAGTGGTTTGTAAATAGGGGTTGCCGGGACATGGAGCTTTGCCTTGCTCTTACAGCTGCTACGTCCAGTTGTCAGGTTG ATGTTGCTGCCTACCTCCTACCTCATGTACCTCACCATGTACTTGCAGCCCTTAGCATCGAAATTTTGAAAGCTGCGGGGGAGAGAAGTGGTGGTTCACT TGATGGTGTTGCTTTTCTTCTCCGATCAGACTTCTTAGGAGACCCCGCTGCTACTTATGCGGTTGCAGACAGCATTGCTCGGTCTGATGATGAGGCAGTT GCCCCAGATCTAAAGTCTTTTCTGCTAGAAAATTGGTCAGAGGCAGCTTTCTCAGATGGATTGAAGCAAGGAGAAGAACATTACATGAATTTGTTGAGGA TTTTGAATTGGGGGGAATCTCCAATATGCTTGAGTGATCTTCCAGGGCCTTTAAGAATTGCAATAGCTTACATTCCACTGTATAGGGAATGCATAGCAGC CGGTGGATGTTTGTTATCACAAAGGCTAAGGGGGCAGCTTGTGGAAGCTGTTAAAAGGCTGGCGGGAGTATCGATGGTGGAGGTTAGCCAGGGTAGAGAG CTGTTAACGGTATTGGAACATCACCTTCCTCCTTTCCTGGTTCAACCTATCATAGAGTGA
AA sequence Show only first row Show all	>Lus10010581 pacid=23169664 polypeptide=Lus10010581 locus=Lus10010581.g ID=Lus10010581.BGIv1.0 annot-version=v1.0 MAFVGSTHTPIMQGLNPDESFCGEMETDDFESPNPNNEIQCFTSERGEGSNVVFSREAPLVSKESRRPIHCSCSSKKLKSRMVGAESEGIKDSVGNEKKF SRQDRMEWGRLFQGAVSSHDWELAESLILLADPHTLNDALCITLDSIWFLSTEQELHGITGLVKKIIANGADDFTRAALRTSFLASCVSACQSHTMSLAD TVTVMAQRLHERLQDCNGDEVLKAEAGAKVQKFTEWALKCIGFHSRCQGSRGRVNHSSTVEIQLQLSAFKVFLDLAGNQLTGKDFTEAFDAACFPLTLFS SSFDPGWASGISATAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFAAHYGKIDTMECLVEEGNAITFLGPLMRAAE RGCMQVVQWFVNRGCRDMELCLALTAATSSCQVDVAAYLLPHVPHHVLAALSIEILKAAGERSGGSLDGVAFLLRSDFLGDPAATYAVADSIARSDDEAV APDLKSFLLENWSEAAFSDGLKQGEEHYMNLLRILNWGESPICLSDLPGPLRIAIAYIPLYRECIAAGGCLLSQRLRGQLVEAVKRLAGVSMVEVSQGRE LLTVLEHHLPPFLVQPIIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	0	1
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	1.0	0.9155
AT1G80400			RING/U-box superfamily protein...		Lus10023112 [exp]	2.0	0.8829
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	2.0	0.8710
AT4G16580			Protein phosphatase 2C family ...		Lus10010797 [exp]	2.2	0.8690
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	3.0	0.8740
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10013216 [exp]	3.6	0.8390
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004561 [exp]	4.1	0.8319
AT1G02290			unknown protein		Lus10028606 [exp]	4.6	0.8549
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	5.7	0.8544
AT5G02620		ATANK1, ANK1	ankyrin-like1 (.1)		Lus10025288 [exp]	7.2	0.8188

Compare expression of checked genes

Lus10010581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.