Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) AT2G43880 422 / 1e-146 Pectin lyase-like superfamily protein (.1) AT1G05650 421 / 4e-146 Pectin lyase-like superfamily protein (.1) AT2G43890 414 / 1e-143 Pectin lyase-like superfamily protein (.1) AT3G59850 398 / 3e-137 Pectin lyase-like superfamily protein (.1) AT2G43870 381 / 1e-130 Pectin lyase-like superfamily protein (.1) AT1G65570 344 / 5e-116 Pectin lyase-like superfamily protein (.1) AT2G43860 338 / 1e-113 Pectin lyase-like superfamily protein (.1) AT1G17150 265 / 4e-85 Pectin lyase-like superfamily protein (.1) AT3G07970 265 / 2e-84 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005304 [exp] 806 / 0 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 615 / 0 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 394 / 1e-135 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 394 / 1e-135 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 390 / 5e-134 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 374 / 2e-127 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 374 / 2e-127 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 357 / 5e-121 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10002126 [exp] 352 / 9e-119 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G006400 [exp] 459 / 2e-161 AT1G05660 472 / 1e-166 Pectin lyase-like superfamily protein (.1) Potri.017G006700 [exp] 424 / 3e-147 AT2G43890 591 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G145300 [exp] 416 / 2e-144 AT2G43890 566 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006500 [exp] 404 / 2e-139 AT2G43890 552 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144100 [exp] 389 / 1e-133 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144500 [exp] 387 / 6e-133 AT3G59850 493 / 3e-175 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 386 / 2e-132 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 385 / 7e-132 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 384 / 2e-131 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 383 / 2e-131 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10010584 pacid=23169657 polypeptide=Lus10010584 locus=Lus10010584.g ID=Lus10010584.BGIv1.0 annot-version=v1.0 ATGGAGAAAATCAGTGGAAATTTACTTCTGATTCTCCATCTCTTTCTCTTCTTCTTAGAAGCGACGGCTAATTCTTCATTGCTGGTGGACCCTTTCAATA ATTCTACTTCCCAAGTTTCCAATAAGAAGAAACGAGCCGGCGGTGTGCCTCATGTGACCTTCAACGTCCTCCACTACGGTGCCAAGGCCGACGGCGTCTC TGACTCAACTCCGGCATTCTCCCAGGCATGGGAAGACGCCTGCCGCTCCAACAGGCCCGCCGCAGTTGTGGTCCCACGTGGGACCTACATGCTGAAACCC ATCGTCTTCTACGGTCCCTGCAAGAGCAAGATGATGCTCCGCGTTGAAGGCAAGGTCGTGGGACCTGCCCATTACTGGGACTTCGGAAAATCTGGGTTTT GGATTTTGTTCTATAAGCTTGATAAGTTTACTATCCATGGCGGCATCTTTGATGCTCAAGCTGCCGATTACTGGAAGTGTCGCCAGTCCCACAGCTCCTG CCCTTTCGGCACTAAGTCCATATCAATAATACAGTCAAGAAATGTGGTGGTAAAGGGGCTGACCTCGTTAAACAGCCAAATGTTCCACATAGCCATAGAC CATTGCCACCAAGTGTTGCTCAAAAAGATACACATCCAAGCCCCGTCGAGGAGTCTAAACACGGACGGGATCCACATCCAGTCATCGGAAGGGATAACGA TCTCGGGAGCAGTGATAAAGACAGGGGACGATTGCATTGCAATCGGGCCAGGGAGCAAGAACCTAAAGATAAGAGGGGTGAAGTGCGGACCGGGGCACGG TATCAGCATCGGGAGTCTGGCACTGCACGAGCACGAGGATGGTGTGGAAAACGTCCTGGTAACCGACTCTACTTTCATCGGTTCTCAAAATGGGGTCCGG ATCAAGTCCTGGGGTAGGAAAACAACGAGCTTTGTCAACAATGTCATGTTCCAGAACATTCTTATGGACAATGTCTATAATCCCATCATCATTGACCAGA ATTACTGTCCCTACAACAAGAATTGCCCCGGAATGGGTTCTGGGGTAAAGATTACGGGAATAACGTATCGGAACATACATGGAACCTCAGCTTCTCCAGT AGCAGTCAAGTTTATTTGCAGTGCTAGCCGACCCTGTACCGGTCTCCGAGTAGCTAATGTAAAGCTCACATACCACAAGGCTGCTGCCACCTCTTATTGC ACTCACGCTGGTGGAGGTGCCGCCGGTGTTGTCAGCCTTAAGGGTTGTTTTCACAAATGA
AA sequence Show only first row Show all	>Lus10010584 pacid=23169657 polypeptide=Lus10010584 locus=Lus10010584.g ID=Lus10010584.BGIv1.0 annot-version=v1.0 MEKISGNLLLILHLFLFFLEATANSSLLVDPFNNSTSQVSNKKKRAGGVPHVTFNVLHYGAKADGVSDSTPAFSQAWEDACRSNRPAAVVVPRGTYMLKP IVFYGPCKSKMMLRVEGKVVGPAHYWDFGKSGFWILFYKLDKFTIHGGIFDAQAADYWKCRQSHSSCPFGTKSISIIQSRNVVVKGLTSLNSQMFHIAID HCHQVLLKKIHIQAPSRSLNTDGIHIQSSEGITISGAVIKTGDDCIAIGPGSKNLKIRGVKCGPGHGISIGSLALHEHEDGVENVLVTDSTFIGSQNGVR IKSWGRKTTSFVNNVMFQNILMDNVYNPIIIDQNYCPYNKNCPGMGSGVKITGITYRNIHGTSASPVAVKFICSASRPCTGLRVANVKLTYHKAAATSYC THAGGGAAGVVSLKGCFHK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05660			Pectin lyase-like superfamily ...		Lus10010584 [exp]	0	1
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10033764 [exp]	1.0	0.8214
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10003366 [exp]	3.2	0.7325
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10016229 [exp]	4.9	0.7244
AT5G45840			Leucine-rich repeat protein ki...		Lus10029228 [exp]	6.3	0.7860
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Lus10040889 [exp]	9.5	0.7672
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10042395 [exp]	9.6	0.7407
					Lus10032733 [exp]	11.6	0.6723
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022104 [exp]	13.9	0.6886
AT5G40960			Protein of unknown function (D...		Lus10012541 [exp]	15.0	0.6229
AT2G28490			RmlC-like cupins superfamily p...		Lus10006420 [exp]	15.5	0.5964

Compare expression of checked genes

Lus10010584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.