Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30290 480 / 1e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 163 / 3e-44 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 157 / 1e-41 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04760 152 / 2e-40 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 144 / 3e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62670 143 / 4e-37 RPF2 rna processing factor 2 (.1) AT1G63070 141 / 2e-36 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G20090 141 / 2e-36 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 140 / 3e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 140 / 3e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005303 [exp] 703 / 0 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 144 / 4e-37 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 140 / 1e-35 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 140 / 1e-35 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 139 / 3e-35 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036238 [exp] 135 / 4e-34 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 134 / 5e-34 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022861 [exp] 134 / 5e-34 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027916 [exp] 134 / 1e-33 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G082300 [exp] 520 / 4e-179 AT1G30290 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 155 / 5e-41 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G109500 [exp] 146 / 2e-38 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G034400 [exp] 144 / 1e-37 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G124900 [exp] 145 / 2e-37 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 144 / 4e-37 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G014500 [exp] 142 / 2e-36 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G038400 [exp] 141 / 2e-36 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 140 / 4e-36 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 139 / 6e-36 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010585 pacid=23169658 polypeptide=Lus10010585 locus=Lus10010585.g ID=Lus10010585.BGIv1.0 annot-version=v1.0 ATGAGGCGTGCAGAATTTGCCTGCGGGAATTTTGAATCTGCTGGATTTGATGATGTTGATGAATCAGAGGTTGATGATGGTGGAGGAGATGGTAGTTGCA GCAGCGATGATGAGAAAAGTCTTACGGCTTTAGATTCTTTCAATAGGAATCGGAATTGGAATCGTGGTGAGCAAAAGGAAGCAGAACACACCATGAAAGT CGAGTTAGGGGAACACGAACTTCGGCACCCTTTGGTGAGGAAGGTCTGTAGTCTAATTGATCGTAGGTCAGCTTGGAATCCCAAGATAGAAGGGGAATTG AGAAACTTACTTAGGAGCCTCAAGCCTCGGCTAGTTTGTGCTGTTTTGCGATCTCAAGCAGATGAAAGACTTGCTTTAAGTTTCTTCTATTGGGCTGACC GCCATTGGAGTCGGGCTGGTAGATTGAGGAATGCATTGCAGGTTTTGACAATGATGCAGAAAGCGGGTATTGACCCTAATCTCTTAATATGTAACACCAC TATCCATGTTCTGGTATTGCCAAATAGATTGGAAAAGGCATTGAGGTTCTTGGACAGGATGCAGGTCGTTGGAATCATCCCCAACGTTGTAACTTACTCT TTGATCAAAGGATACTGTGATCTTCACCGAGTCGAATATGCTATGGAGTTTATTACTGAAATGCCATCCAAAGGATGCCATCCTGACAAAGACAGTAAGT TGCTTCCAGATCAGGTTACTTATAATATTCTGATTCCGGTGCTTTCCAAGCATCAGCATTCAGATGAGGCACTTGCATTTGTGAAGGAAGCAGAGGAAAG AGGATTTCAGGTTGATAAGGTCGAATACAGTACAGTAGTTGACTCCTTCTGTAAGCAAGTCGACCAAGCCAAAAGGATGCTTCAGCAAATGTACAAACAT GGCTGCAAGCCCAACACTGTGTCATATACAGCTCTACTGAACTGGCTTTGTCGAAACGGGAACTCCTCCGAGGCTAGGGAAATGCTGAACACAAGTGAGG AAGAATGGTGGATTCCGAATGCCATCACATATAGTGCTGTAAATCATGGGTTACGGAGGGAGGGAAAATTGGGTGAAGCTTGTGATGTGGTGAGAGAGAT TGTTGGGAAATCATTTTGCCCTACTCCTGTTGAGATTAATCTATTAATGCAGTCACTTAACCGAGAAGGTGAAGCAGACGTTGGTAAGAAGTTCATGGAG GAGTATCTACAAAATGGTTGTGCTGTGAATACAGTGAACTTTACTAGTGTTATTCATGGGTTTTGTCAGAATGATAACTTTGATGCAGCTTTGGCTTGA
AA sequence Show only first row Show all	>Lus10010585 pacid=23169658 polypeptide=Lus10010585 locus=Lus10010585.g ID=Lus10010585.BGIv1.0 annot-version=v1.0 MRRAEFACGNFESAGFDDVDESEVDDGGGDGSCSSDDEKSLTALDSFNRNRNWNRGEQKEAEHTMKVELGEHELRHPLVRKVCSLIDRRSAWNPKIEGEL RNLLRSLKPRLVCAVLRSQADERLALSFFYWADRHWSRAGRLRNALQVLTMMQKAGIDPNLLICNTTIHVLVLPNRLEKALRFLDRMQVVGIIPNVVTYS LIKGYCDLHRVEYAMEFITEMPSKGCHPDKDSKLLPDQVTYNILIPVLSKHQHSDEALAFVKEAEERGFQVDKVEYSTVVDSFCKQVDQAKRMLQQMYKH GCKPNTVSYTALLNWLCRNGNSSEAREMLNTSEEEWWIPNAITYSAVNHGLRREGKLGEACDVVREIVGKSFCPTPVEINLLMQSLNREGEADVGKKFME EYLQNGCAVNTVNFTSVIHGFCQNDNFDAALA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30290			Tetratricopeptide repeat (TPR)...		Lus10010585 [exp]	0	1
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10002454 [exp]	2.2	0.8395
AT1G55535			unknown protein		Lus10021858 [exp]	3.7	0.8319
AT1G01710			Acyl-CoA thioesterase family p...		Lus10037853 [exp]	5.2	0.8171
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10038276 [exp]	11.7	0.7602
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	11.7	0.7915
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	12.2	0.7921
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10027897 [exp]	12.5	0.7454
AT5G61450			P-loop containing nucleoside t...		Lus10031740 [exp]	13.8	0.7759
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	16.1	0.7900
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	19.2	0.7985

Compare expression of checked genes

Lus10010585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.