Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005311 [exp] 224 / 6e-74 AT2G43630 122 / 4e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123800 [exp] 53 / 1e-08 AT2G43630 194 / 2e-61 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010586 pacid=23169660 polypeptide=Lus10010586 locus=Lus10010586.g ID=Lus10010586.BGIv1.0 annot-version=v1.0 ATGGTACTCTGCATTCAAGCAAACCCCTGTCGGACTCATGGCCAGCTTCAGTTGCCTCAATTCCACACACAACTAAACAAACCGTGTAGTAGCCAAACTC CAAGGATGCTCCTGAGACCTGCTGCTAAATACCTACCTGTGCTGATGCTTCAACAATATAACCTCTCAGCAAAATACCAGCGACGTTCCCATGTTTGCTT ACTTGGGGGAAATGAGAACTCTCAAGGAGAAAATGAGGGATCTCCTCTGAAGTCTCTTGAAAATGCTTTTGGAAGTTCCAAGGGTAAATCATTAGAAGAT GTGCTAAGAGAACAGATGAACCAGAACAACGACGAGTTTGATGAAGGCAGCATTGGTGACTTTCCGCCAAGAGATGGCAGTGGCGGCGGAGGCGGAGGTG ATAGTTTCCAGGGTCCCCAGGATGATGACGTGCCTGGAATGTTGGATGAAACACTTCAAATGGTTTTAGCTAGCCTGGGATTTTTCCTAGCGGTAAGAAG ATATAGTCTCTCCTTGTGGGTTTACCTGGCGTCTTAG
AA sequence Show only first row Show all	>Lus10010586 pacid=23169660 polypeptide=Lus10010586 locus=Lus10010586.g ID=Lus10010586.BGIv1.0 annot-version=v1.0 MVLCIQANPCRTHGQLQLPQFHTQLNKPCSSQTPRMLLRPAAKYLPVLMLQQYNLSAKYQRRSHVCLLGGNENSQGENEGSPLKSLENAFGSSKGKSLED VLREQMNQNNDEFDEGSIGDFPPRDGSGGGGGGDSFQGPQDDDVPGMLDETLQMVLASLGFFLAVRRYSLSLWVYLAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43630			unknown protein		Lus10010586 [exp]	0	1
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10020948 [exp]	2.0	0.8463
AT3G10350			P-loop containing nucleoside t...		Lus10038715 [exp]	8.2	0.8302
AT3G19810			Protein of unknown function (D...		Lus10017411 [exp]	14.5	0.7829
AT1G77122			Uncharacterised protein family...		Lus10018923 [exp]	16.3	0.7874
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Lus10004435 [exp]	17.0	0.7847
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	19.0	0.8345
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10000187 [exp]	19.2	0.8020
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	20.1	0.8422
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Lus10036477 [exp]	23.4	0.8033
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10017446 [exp]	37.6	0.7985

Compare expression of checked genes

Lus10010586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.