Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56170 99 / 2e-26 LLG1 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) AT2G20700 88 / 3e-22 LLG2 LORELEI-LIKE-GPI ANCHORED PROTEIN 2 (.1) AT4G26466 87 / 5e-22 LRE lorelei (.1) AT4G28280 86 / 1e-21 LLG3 LORELEI-LIKE-GPI ANCHORED PROTEIN 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027120 [exp] 119 / 1e-34 AT5G56170 179 / 3e-58 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10000404 [exp] 119 / 2e-34 AT5G56170 180 / 2e-58 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10000405 [exp] 87 / 7e-22 AT5G56170 149 / 1e-46 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10033695 [exp] 86 / 8e-22 AT5G56170 135 / 2e-41 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10031643 [exp] 82 / 4e-20 AT5G56170 98 / 2e-28 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10033694 [exp] 70 / 8e-16 AT5G56170 140 / 2e-43 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10031642 [exp] 49 / 8e-08 AT4G26466 84 / 2e-21 lorelei (.1) Lus10033696 [exp] 47 / 9e-07 AT4G26466 83 / 9e-21 lorelei (.1) Lus10039822 [exp] 45 / 4e-06 AT4G26466 79 / 3e-19 lorelei (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471500 [exp] 102 / 5e-28 AT5G56170 183 / 8e-60 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Potri.011G168500 [exp] 101 / 2e-27 AT5G56170 171 / 9e-55 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Potri.019G095200 [exp] 91 / 2e-23 AT5G56170 153 / 7e-48 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Potri.013G132000 [exp] 90 / 6e-23 AT5G56170 159 / 2e-50 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010587 pacid=23169672 polypeptide=Lus10010587 locus=Lus10010587.g ID=Lus10010587.BGIv1.0 annot-version=v1.0 ATGCCCCAGACATCGGCTTTAAATACTCAGAGGACCAATGAAGTCCATTCGTACACCATCTCTTCTTACTTTCATCCTCGTGTCGCCGGAGATTCACCAG AGTTTCACCAGACCACAGCTGCTGATAGAATTTCGCGGATCCGTCTTCTCCTCCGTACGGTTAAGGGAAATGATGGAGATGGTACTATGCAATGGGAAAG TGATGATGGTGAAGAAGAGGAGATGGATGACAGTTCTGTCTTTGGACCAGATATTGGTCATGGTGGTGGTGGCAGGAGTCTACTTCAAGCCAAGAACGCT TGCCCTGTGAACTTCGAATTCATGAACTACACAGTCATCACAAGCCAGTGCAAAGGACCAAGTTATCCTGTGAAGGAGTGTTGCTCGTCGCTCAAGGAAT TCGGATGCCCTTTTGCAGAAATGTTGAACGATTTAACCAACGACTGTTGGAAGTCAGGGTCTAAGTACTCGAGAACCACTGCTAGTATTCTCAGCTGGAT TCCTAGTAATGTTGCTTCAGGAACCTAG
AA sequence Show only first row Show all	>Lus10010587 pacid=23169672 polypeptide=Lus10010587 locus=Lus10010587.g ID=Lus10010587.BGIv1.0 annot-version=v1.0 MPQTSALNTQRTNEVHSYTISSYFHPRVAGDSPEFHQTTAADRISRIRLLLRTVKGNDGDGTMQWESDDGEEEEMDDSSVFGPDIGHGGGGRSLLQAKNA CPVNFEFMNYTVITSQCKGPSYPVKECCSSLKEFGCPFAEMLNDLTNDCWKSGSKYSRTTASILSWIPSNVASGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10010587 [exp]	0	1
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	3.3	0.9108
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10036684 [exp]	4.7	0.8267
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10043305 [exp]	5.5	0.8631
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	6.2	0.8593
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10010741 [exp]	8.2	0.8038
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	9.2	0.8466
AT2G20870			cell wall protein precursor, p...		Lus10039801 [exp]	12.2	0.8364
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018350 [exp]	12.2	0.8404
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023455 [exp]	13.8	0.8324
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	19.4	0.8233

Compare expression of checked genes

Lus10010587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.