Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042979 [exp] 434 / 3e-143 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10027612 [exp] 196 / 2e-54 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10006887 [exp] 190 / 7e-52 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10036312 [exp] 182 / 1e-49 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10025008 [exp] 177 / 1e-48 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10026445 [exp] 168 / 1e-45 AT4G19130 41 / 0.002 Replication factor-A protein 1-related (.1) Lus10003025 [exp] 156 / 1e-41 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10023787 [exp] 142 / 9e-37 ND 44 / 3e-04 Lus10034056 [exp] 134 / 2e-33 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G004401 [exp] 44 / 0.0001 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.019G061550 [exp] 45 / 0.0002 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010590 pacid=23169669 polypeptide=Lus10010590 locus=Lus10010590.g ID=Lus10010590.BGIv1.0 annot-version=v1.0 ATGCCATCGGCACGGTTCTCGAATGGCCATCTCCGCCCTTACCATAAACATCGTTCTTATCCACACCGCTCTCTCCCATTTCTTCTCTTCCCTCTGCCCT CTCTTTCTACCCGCTCCCCTAATTTCCAGTGCTCTTCCGTCTGGCAATGCGTCCTTATTCAATGCTACTCCGTGAGATCGTCGTCAACAGCCCTCCGACC AAAGTCCTTTTTACGGCTGCAAGACTTGTGGCGGGTAGGAAACCCATCTGACCTGTCGAATTTTTTTGCCGTCGGCACCCTCCGGACTGATGCCAAGGGG GTGCGGGTTCAAGGTGACTCCCACAAAAACTTCCTCAAGGTCATGGAAAAGTGGGTTACCGTTGGGTGCGTCTATAAGATTTATGGCTACACCTTTCGCT CCCCGCGTGATAAGTTTCATGCATGCGAGTACCCGCACTGGTTGTCCCTGGTTCCAACGACGCAGTTTGACCTCGAGGTCTCGCCCGAAACGCCTTTCAA AGCTGAGTCCTTTGAATTTGTTCCCTTCTCCAAACTTGCTTCTCGAAACTACCCATCCCCCTTTCTTGCAGATTTTATTGGCAATCTCATTGAGGCTAGG AAGCGAAATCACGTCCAGATCAAGAAAAATGTTTCCCCGGTTCAGTCCCTCACAATAGGTGATAAACGGTTATCTTCTATCCACCCATTCACCTCATTCA TCTCCCACATCCAATCTTGCTTCCTCGGTGCCTTTGAAGTTGATGTGTCGCTTTGGGGTGACCTTTCCAACGTTATCGATCCTCACATGGTCGTTTTTTA TGATATGGCAAACCCGATTATTATTGCCTTCTCAGGCTTTCGTATGGGCATCTATGAAGGTTCGATTTGTTTTCGTGCTGTTATGTTTCCACCCTATTTG TTGCATGTTTACCCTGATGTTAGCCTTGCATATATGTATGTAGGGAGGACTGCCACCTACAGTGGTGGTGCCAGCCGGGTTTTCGTGGACCTGAAACATC CTATGGCCGACTCCCTTAGGGCAGTGTTTGTCACCCGACCTCAGGAAATCCAGATTGTCGTCCCAAAATTTCCTACTCTAGAAAAGTTACAACAACATCT AGCTGAATCGCAGCACAACATTAATGAACTGCTTGATCTTTATACTTCTGGTGGAGATTTGGTTAGTATCCCGTTCAGTCTCATAGAAAGTCAGCTCGTT GTGGTCCCTCCTATACATGCCAGTTCCTGTTCCTCTCCATTGTCCACACTTGGTCTTCCTGTTCGGGCACCTCCCACCCCCCATGTTTTATCGAGTAAAC CAGACAGAGTGGGAACAAGTTTGGTTTGTGCGATTCCTGCAACACCAGCACAAAAACTGCTCGCTCTGTTGGTCCCTCGTCAAAACCTGCATGTGACTAG TGTGTGGAGGTTGATGATTTTGCTCAACTTCTCCTTGCAAGCTTTTTTTACAAAAAAACAACGTAAGTCCAATCCACAAACTCCAATTGCATCTGCAGCC TCTACCACAACTGCTCAGCCAGAGTCTGCGACATTGTACGCATCTCCTCTAGCAAAGGTCAAACAGGAATGTCTCGCTCAAAACACTCCACCACCTGCTC AGATTCAGCCTGGGGAAATGCCTCCTGTTAAATCATCCCTGACATATGACGAGCATGTCGCAAAACGTCTTTTTACGTAG
AA sequence Show only first row Show all	>Lus10010590 pacid=23169669 polypeptide=Lus10010590 locus=Lus10010590.g ID=Lus10010590.BGIv1.0 annot-version=v1.0 MPSARFSNGHLRPYHKHRSYPHRSLPFLLFPLPSLSTRSPNFQCSSVWQCVLIQCYSVRSSSTALRPKSFLRLQDLWRVGNPSDLSNFFAVGTLRTDAKG VRVQGDSHKNFLKVMEKWVTVGCVYKIYGYTFRSPRDKFHACEYPHWLSLVPTTQFDLEVSPETPFKAESFEFVPFSKLASRNYPSPFLADFIGNLIEAR KRNHVQIKKNVSPVQSLTIGDKRLSSIHPFTSFISHIQSCFLGAFEVDVSLWGDLSNVIDPHMVVFYDMANPIIIAFSGFRMGIYEGSICFRAVMFPPYL LHVYPDVSLAYMYVGRTATYSGGASRVFVDLKHPMADSLRAVFVTRPQEIQIVVPKFPTLEKLQQHLAESQHNINELLDLYTSGGDLVSIPFSLIESQLV VVPPIHASSCSSPLSTLGLPVRAPPTPHVLSSKPDRVGTSLVCAIPATPAQKLLALLVPRQNLHVTSVWRLMILLNFSLQAFFTKKQRKSNPQTPIASAA STTTAQPESATLYASPLAKVKQECLAQNTPPPAQIQPGEMPPVKSSLTYDEHVAKRLFT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010590 [exp]	0	1

Compare expression of checked genes

Lus10010590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.