Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 328 / 2e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 326 / 5e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 303 / 1e-96 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 301 / 5e-96 MEF21 mitochondrial editing factor 21 (.1) AT5G56310 299 / 5e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 301 / 1e-94 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 300 / 2e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G42920 293 / 1e-92 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G37380 294 / 4e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 293 / 7e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024971 [exp] 331 / 3e-106 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 330 / 9e-106 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 327 / 2e-104 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 325 / 7e-104 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 324 / 4e-103 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 318 / 5e-101 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 309 / 8e-98 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005987 [exp] 301 / 2e-96 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007341 [exp] 303 / 3e-96 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471600 [exp] 577 / 0 AT2G20540 329 / 1e-106 mitochondrial editing factor 21 (.1) Potri.004G237000 [exp] 339 / 2e-109 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 331 / 4e-106 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 326 / 2e-105 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 328 / 1e-104 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G202600 [exp] 317 / 8e-102 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.008G106500 [exp] 317 / 2e-101 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 321 / 3e-101 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086200 [exp] 320 / 7e-101 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 316 / 1e-100 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010591 pacid=23169656 polypeptide=Lus10010591 locus=Lus10010591.g ID=Lus10010591.BGIv1.0 annot-version=v1.0 ATGGCTATTACTAGTGTGTCACTACGGCCTCCCCCAGAAATCCTGTTGCTCCAAAAGTGTACCGAGTTGCAGGAAGTAAGAGAGTTACACGCCCAATTTG TAGTGTCAGGATTGATCCACAATCACAAAATTGCACCCAAGAGACTCATCCAGGCTTATGTAAAAACATCTAACGTCGGCCCAGCCATATCCATCTTCGA AACATCCATACTTTCACCTGATGTGTTTGTGTACAACACCATCATCCGAGGTCTCATTACTCATGATGATGATTGCCCAGCTCGTGCCCTCCTATACTAC AATCGACTCTTGCTTCACCCTCACCAACCTGACAACTACACCTACACATTCGTGCTCAAAGCATGTTCACGCCTCCTCCACAATCCTCTTTTCGTAGGTA AACAGGTGCATAACCGTATCATAAAGGCCGGAGTCTCCCCCAACACTTATGTTCATAGCTCCCTGATTCATATGTATGCAACCTCAGGCTGTATGGAAGA CGCAGAACGCGTTCTCGGGGAGTTTGGCGATGAAGAGAATGTGGATGCTACCAACTCCATAATTTCTGGCTACTGCAGGGTTGGACGAGTTGATGAGGCT AGAGCCAAGTTTGATGGTATGAGAGACAAAGATGTGGCTTCCTGGAGTGCAATGGTCAACGGGTATACTCAGAATGAGATGCATATGGAGGCACTATTTC TCTTCCACTACATGACTGTGATTGATCCAGAGATTCTTCCGAACGAGTCGATGTTAGTGAGTTTGCTGACTACCTGTGGATGCGTGGGAGCTCTAGCTCA GGGGAGATGGATCCACAAGTATATTGATAGGGTTGGGATCAAGAATACAGCCACTCTTTCGACAGCGATGGTGGACATGTATGCCAAATGTGGCAGCATA GAGTGTAGCTATGGGATGTTTAAGAAAATGGCAACAAGAGACAGAGACGTTGTATCTTGGGGAGCCATGATTTCTGGGTTCGCAATCCACGGCCAGGCTA CGAAATGTCTGCAATTGTTTGATGAGATGATTGCTTACGGAATTCGACCCAATGTAGTCATCTTTGTTGCTGTACTAACCGCTTGCAGTCGTTCAGGGTT GGTCGAGAAAGGGCAGCAGTATTTCCAGGAGATGGTGCATAGATTCAAAATAACTCCAACTATCGAACACTACGGATGTATGGTAGATATGCTGGCTCGT ATAGGTAGGTTAGAGGAGTCGCAAGAGCTGATAGAGTCGATGCCGGAGCAGGCGAACTCAGTGATATTAAGAGCATTCCTCAGTGGTTGCAGGATACATA ACGACATCGGGAGAGCAAGTTGGGCATTCCGGAAACTGATGGAAGTTGAGCCACTATCAGGGGACATGTGTAAGATGGGAGAGCTTATGTTTGCAAGTGC AGGCAGGCAAAAGGAAGCAACAAAGATTAGGAGGATAATGAATGCAGCCGGAATGGAGAGGACAGCAGGATGCAGTTTTATTGAAGTAGATGGCACTGTC CATCAATTTATTGCTGGAGACATTATGCATAGTCAAACTGAAGAGATTTATAGAATGTGCAGTACCATTAACACAAGTATGGGAAGACCTCACTAA
AA sequence Show only first row Show all	>Lus10010591 pacid=23169656 polypeptide=Lus10010591 locus=Lus10010591.g ID=Lus10010591.BGIv1.0 annot-version=v1.0 MAITSVSLRPPPEILLLQKCTELQEVRELHAQFVVSGLIHNHKIAPKRLIQAYVKTSNVGPAISIFETSILSPDVFVYNTIIRGLITHDDDCPARALLYY NRLLLHPHQPDNYTYTFVLKACSRLLHNPLFVGKQVHNRIIKAGVSPNTYVHSSLIHMYATSGCMEDAERVLGEFGDEENVDATNSIISGYCRVGRVDEA RAKFDGMRDKDVASWSAMVNGYTQNEMHMEALFLFHYMTVIDPEILPNESMLVSLLTTCGCVGALAQGRWIHKYIDRVGIKNTATLSTAMVDMYAKCGSI ECSYGMFKKMATRDRDVVSWGAMISGFAIHGQATKCLQLFDEMIAYGIRPNVVIFVAVLTACSRSGLVEKGQQYFQEMVHRFKITPTIEHYGCMVDMLAR IGRLEESQELIESMPEQANSVILRAFLSGCRIHNDIGRASWAFRKLMEVEPLSGDMCKMGELMFASAGRQKEATKIRRIMNAAGMERTAGCSFIEVDGTV HQFIAGDIMHSQTEEIYRMCSTINTSMGRPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010591 [exp]	0	1
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Lus10007535 [exp]	2.4	0.9144
AT3G48200			unknown protein		Lus10039976 [exp]	3.0	0.8998
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10005294 [exp]	6.0	0.8840
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10002710 [exp]	8.9	0.8998
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10006931 [exp]	13.2	0.9047
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	14.9	0.8891
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10012591 [exp]	15.0	0.8966
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10009203 [exp]	15.2	0.8760
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10007837 [exp]	17.1	0.8673
					Lus10034297 [exp]	20.3	0.8245

Compare expression of checked genes

Lus10010591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.