Plant FIBer expression Database

Lus10010592 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59990 270 / 3e-87 MAP2B methionine aminopeptidase 2B (.1.2.3.4)
AT2G44180 254 / 2e-81 MAP2A methionine aminopeptidase 2A (.1)
AT3G51800 59 / 2e-09 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005292
[exp]
342 / 1e-117 AT3G59990 419 / 6e-147 methionine aminopeptidase 2B (.1.2.3.4)
Lus10000403
[exp]
277 / 4e-90 AT2G44180 682 / 0.0 methionine aminopeptidase 2A (.1)
Lus10027121
[exp]
221 / 2e-69 AT2G44180 475 / 7e-168 methionine aminopeptidase 2A (.1)
Lus10002851
[exp]
59 / 2e-09 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Lus10003379
[exp]
57 / 1e-08 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Lus10005046
[exp]
56 / 2e-08 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Lus10027818
[exp]
56 / 2e-08 AT3G51800 602 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Lus10023798
[exp]
50 / 2e-06 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G133200
[exp]
277 / 4e-90 AT3G59990 716 / 0.0 methionine aminopeptidase 2B (.1.2.3.4)
Potri.004G084800
[exp]
275 / 2e-89 AT3G59990 712 / 0.0 methionine aminopeptidase 2B (.1.2.3.4)
Potri.016G119700
[exp]
61 / 5e-10 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Potri.006G102200
[exp]
61 / 6e-10 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00557 Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence
>Lus10010592 pacid=23169670 polypeptide=Lus10010592 locus=Lus10010592.g ID=Lus10010592.BGIv1.0 annot-version=v1.0
ATGGCAGATGAAGTTTTGAAGAAGGAGGTTGCTATTGAAGACAATGGCGCTGAGGAAAAGAATGGGACTTTAGAGCCTTCAGTGGGTAATGACAACGATG
AGTCGTCTGCTGGGCAGAATGATGCTGATGAGAAGAAAGATGCATTACTAAGACTACTTGGAGATAACAGAGAAAAGTTGAAGAAGAAGGAAGCACCTCA
GCAGACTGATCCACCCACTATTCCTGTTGCCGAGCTCTTCCTATCTGCTGAATTTCCTGAGGGTGAAATTCAACAATACAAAGATGATAACTTGTGGCGT
GCGACTTCTGAGGAGAAGAGAGAGTTGGAGCGTCTTGAAAAACCATTATATAACTCAGTTCGACAAGCTGCAGAAGTTCATCGACAGGTTCGCAAATATA
TCAGAAGCATTTTGAAGCCTGGAATGTTAATGACCGACCTTTGTGAGACATTGGAAAACACAGTTCGTAAGCTAATATCAGAAAACGGTCTCCATGCTGG
AATTGCCTTTCCGACGGGATGCTCGCTGAACTGGGTTGCTGCTCACTGGACCCCCAACTCTGGTGACAAGACAGTACTTCAGTATGATGATGTAATGAAG
CTAGATTTTGGGACCCACATTGATGTTAAAAGTATTAGAAACCTGAATGGACACAGTATCGGGCGTTATCAAATTCATGCTGGAAAATCTGTTCCAATTG
TAAAAGGAGGAGAGCAGACTAAAATGGAAGAGGGTGAATTTTACGCAATTGAAACATTTGGCTCAACAGGAAAAGGATATGTGAGAGAAGATCTAGAATG
TAGCCATTACATGAAGAATTTTGATATTGGTCATGTGCCATTGAGAATGGCCAGATCAAAGCAGCTGCTAGCAACAATAGACAAGAACTTTTCAACATTG
GCCTTCTGTAGACGCTACTTAGATCGTCTTGGGGAAACCAAATACTTGATGGCTCTGAAGAATTTATGTGATTCTGGCATTGTTCAGGTACTCCCTCAAG
TTGATATTTTCTTAAAGTCTCCTTCATCTGTTGCAATGATATCTTCTGGTGCAGAAACTTAA
AA sequence
>Lus10010592 pacid=23169670 polypeptide=Lus10010592 locus=Lus10010592.g ID=Lus10010592.BGIv1.0 annot-version=v1.0
MADEVLKKEVAIEDNGAEEKNGTLEPSVGNDNDESSAGQNDADEKKDALLRLLGDNREKLKKKEAPQQTDPPTIPVAELFLSAEFPEGEIQQYKDDNLWR
ATSEEKRELERLEKPLYNSVRQAAEVHRQVRKYIRSILKPGMLMTDLCETLENTVRKLISENGLHAGIAFPTGCSLNWVAAHWTPNSGDKTVLQYDDVMK
LDFGTHIDVKSIRNLNGHSIGRYQIHAGKSVPIVKGGEQTKMEEGEFYAIETFGSTGKGYVREDLECSHYMKNFDIGHVPLRMARSKQLLATIDKNFSTL
AFCRRYLDRLGETKYLMALKNLCDSGIVQVLPQVDIFLKSPSSVAMISSGAET

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G59990 MAP2B methionine aminopeptidase 2B (... Lus10010592
[exp]
0 1
AT1G68310 AE7 AS1/2 ENHANCER7, Protein of un... Lus10031006
[exp]
3.0 0.9139
Lus10011965
[exp]
3.5 0.8705
AT2G29540 ATRPAC14, ATRPC... RNApolymerase 14 kDa subunit (... Lus10040717
[exp]
4.0 0.8672
AT5G57230 Thioredoxin superfamily protei... Lus10003582
[exp]
5.7 0.8966
AT5G14680 Adenine nucleotide alpha hydro... Lus10014545
[exp]
7.5 0.8366
AT4G38980 unknown protein Lus10035474
[exp]
7.5 0.8854
AT5G52840 NADH-ubiquinone oxidoreductase... Lus10038835
[exp]
10.4 0.8577
AT1G45976 SBP1 S-ribonuclease binding protein... Lus10001131
[exp]
12.0 0.8528
AT2G05630 ATG8D Ubiquitin-like superfamily pro... Lus10039656
[exp]
12.1 0.8679
AT1G17130 Family of unknown function (DU... Lus10013707
[exp]
19.4 0.8394

Lus10010592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.