Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25110 336 / 9e-119 AtSDF2, ATSDL, SDF2 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019365 [exp] 411 / 3e-148 AT2G25110 348 / 2e-123 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G020700 [exp] 361 / 2e-128 AT2G25110 347 / 7e-123 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1) Potri.006G263200 [exp] 359 / 9e-128 AT2G25110 345 / 2e-122 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF02815 [flax] [poplar] MIR MIR domain
Representative CDS sequence Show only first row Show all	>Lus10010594 pacid=23169668 polypeptide=Lus10010594 locus=Lus10010594.g ID=Lus10010594.BGIv1.0 annot-version=v1.0 ATGGCTTTATCGTTTCTAGGCGTTTCCATGTTTCTATTCCTCAACCTCGATCTAGATCAGGCCTCCTTCTCCCCCGCATCCGCTGCTTCTTCTACTTCTC AAGGCGTCGAGATTACATATGGCACAGTTCTAAAGCTGATGCACGAGAAGACGAGATTTCGACTGCATTCACATGAGGTGCCCTATGGTTCCGGCAGTGG ACAGCAATCCGTTACAGGATTTCCAAATGTTGATGATTCTAATAGTTATTGGATTGTAAGGCCTGAGCTGGATACTAATGCTAAACAAGGGGACACCATG ACAAGTGGGACGATTTTCCGTTTGCAGCATATGAAGACTAGAAAATGGCTGCACAGTCATTTGCATGCCTCCCCAATATCTGGCAACCTTGAGGTTAGCT GCTTTGGTGGAGAAACTGAATCCGATACGGGGGATCACTGGAGGCTTACAATTGAGGGTGGGGAAAAGACCTGGAAACAAAATCAAAGAGTTCGGTTGCA ACACGTTGACACTGGTGGCTACTTACACAGTCATGACAAGAAGTACCAGAGAATAGCTGGCGGACAACAAGAGGTGTGCGGTGTCCGGGAAAAGCGTGCG GACAATGTGTGGTTAGCAGCAGAAGGTGTGTACCTTCCTGTGGCAGGAAGCATGTAG
AA sequence Show only first row Show all	>Lus10010594 pacid=23169668 polypeptide=Lus10010594 locus=Lus10010594.g ID=Lus10010594.BGIv1.0 annot-version=v1.0 MALSFLGVSMFLFLNLDLDQASFSPASAASSTSQGVEITYGTVLKLMHEKTRFRLHSHEVPYGSGSGQQSVTGFPNVDDSNSYWIVRPELDTNAKQGDTM TSGTIFRLQHMKTRKWLHSHLHASPISGNLEVSCFGGETESDTGDHWRLTIEGGEKTWKQNQRVRLQHVDTGGYLHSHDKKYQRIAGGQQEVCGVREKRA DNVWLAAEGVYLPVAGSM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10010594 [exp]	0	1
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	3.0	0.9269
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035655 [exp]	4.5	0.9017
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10002870 [exp]	5.3	0.8898
AT3G44150			unknown protein		Lus10029366 [exp]	5.8	0.9150
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10020379 [exp]	6.3	0.9079
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	7.5	0.9029
AT2G27260			Late embryogenesis abundant (L...		Lus10034173 [exp]	8.1	0.9053
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10008922 [exp]	8.7	0.8845
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	10.6	0.9040
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	10.8	0.9110

Compare expression of checked genes

Lus10010594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.