Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036784 [exp] 103 / 9e-28 ND / Lus10038051 [exp] 78 / 3e-18 ND / Lus10002161 [exp] 46 / 1e-06 ND / Lus10032723 [exp] 45 / 1e-05 ND / Lus10034889 [exp] 43 / 5e-05 AT1G09190 115 / 9e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012295 [exp] 42 / 7e-05 ND / Lus10005499 [exp] 39 / 0.0006 ND / Lus10004998 [exp] 38 / 0.001 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010597 pacid=23177428 polypeptide=Lus10010597 locus=Lus10010597.g ID=Lus10010597.BGIv1.0 annot-version=v1.0 ATGAAGACCATCCAAGGCAGTGGAGCATCAAATTCAAGAGTTAACCTCGACGCCTTCAAGTGGAGTCGCTATGGTGATATCAGAACTTTCCAAACGAGAC CTCTTCAACATCTTCGAGCTAGGACAGGTTTAGCTCGACCCATGATTTCACCATACATTCAGGGGGCTGCCTTGACTGTATCGAATGCGCGAGTGAAGGA TTTGAAGATGAGACCCGTCCATTTGTATTACAATGCTATGAAGGAACTAGCTGGCTATAACCTAACTGTTGGAGGTACTGGGCATGGTGTCGGTGGAAAT GATGAAGATGAAGAGCGTGAAATAGGTGATTTATCGATCAGAGTAGGTGGCCTCATCCACCTGTTGGAGGACTCATATAGAACATACCCCGAGTTCTACG AAGCCACTGAGAATTTAGGGATACTAGGGATGCAGAGGAATTATAGAGTCGAGCATATGGAAGATGGTGAGGAAGTCGATCAGTTATATGACACAATTCC TCCTAATGAAGAATATTCCTGA
AA sequence Show only first row Show all	>Lus10010597 pacid=23177428 polypeptide=Lus10010597 locus=Lus10010597.g ID=Lus10010597.BGIv1.0 annot-version=v1.0 MKTIQGSGASNSRVNLDAFKWSRYGDIRTFQTRPLQHLRARTGLARPMISPYIQGAALTVSNARVKDLKMRPVHLYYNAMKELAGYNLTVGGTGHGVGGN DEDEEREIGDLSIRVGGLIHLLEDSYRTYPEFYEATENLGILGMQRNYRVEHMEDGEEVDQLYDTIPPNEEYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010597 [exp]	0	1
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10027627 [exp]	1.0	0.8398
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Lus10040829 [exp]	1.4	0.8251
					Lus10033157 [exp]	2.6	0.8114
AT3G22530			unknown protein		Lus10000009 [exp]	3.0	0.8064
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010833 [exp]	3.2	0.8058
AT1G80910			Protein of unknown function (D...		Lus10021811 [exp]	4.4	0.7862
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	4.5	0.8166
					Lus10034884 [exp]	4.9	0.8181
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10018201 [exp]	7.4	0.8052
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	8.2	0.8169

Compare expression of checked genes

Lus10010597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.