Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49810 484 / 2e-170 ARM repeat superfamily protein (.1) AT5G65920 468 / 6e-164 ARM repeat superfamily protein (.1) AT3G19380 149 / 2e-40 PUB25 plant U-box 25 (.1) AT1G49780 137 / 4e-36 PUB26 plant U-box 26 (.1) AT3G18710 132 / 3e-34 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT2G35930 125 / 8e-32 PUB23 plant U-box 23 (.1) AT5G64660 124 / 1e-31 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G54850 114 / 2e-27 ATPUB14 plant U-box 14 (.1) AT1G66160 111 / 1e-26 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT3G46510 108 / 3e-25 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012491 [exp] 183 / 8e-55 AT5G65920 180 / 1e-53 ARM repeat superfamily protein (.1) Lus10005810 [exp] 132 / 1e-34 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) Lus10005500 [exp] 122 / 8e-34 AT5G65920 135 / 3e-39 ARM repeat superfamily protein (.1) Lus10016016 [exp] 125 / 7e-31 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10012260 [exp] 122 / 9e-30 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10043471 [exp] 120 / 3e-29 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10042798 [exp] 117 / 4e-29 AT3G18710 275 / 9e-89 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10034113 [exp] 119 / 1e-28 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10029771 [exp] 115 / 2e-28 AT3G18710 259 / 1e-82 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G116600 [exp] 553 / 0 AT3G49810 546 / 0.0 ARM repeat superfamily protein (.1) Potri.014G014300 [exp] 550 / 0 AT3G49810 553 / 0.0 ARM repeat superfamily protein (.1) Potri.006G277700 [exp] 539 / 0 AT3G49810 498 / 3e-175 ARM repeat superfamily protein (.1) Potri.002G116500 [exp] 538 / 0 AT3G49810 556 / 0.0 ARM repeat superfamily protein (.1) Potri.009G100200 [exp] 153 / 5e-42 AT1G49780 515 / 0.0 plant U-box 26 (.1) Potri.004G140100 [exp] 150 / 6e-41 AT1G49780 517 / 0.0 plant U-box 26 (.1) Potri.007G110600 [exp] 136 / 8e-36 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.005G057500 [exp] 133 / 1e-34 AT5G09800 385 / 5e-132 ARM repeat superfamily protein (.1) Potri.009G016200 [exp] 131 / 6e-34 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.017G135000 [exp] 128 / 1e-32 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10010598 pacid=23177419 polypeptide=Lus10010598 locus=Lus10010598.g ID=Lus10010598.BGIv1.0 annot-version=v1.0 ATGATTGAGGAGCTTGAATCAGTTCAAGTGCCTTCCGTATTCATCTGCCCAATCTCGCTGGAACCCATGCGAGACCCAGTGACCCTCTGCACTGGACAGA CATACGAGAGATCCAACATCATGAAATGGTTCTCAATGGGACACTACACTTGCCCCACCACCATGCAAGAGCTATGGGACCATGACCTCACTCCCAACGC CACTCTCCAGCACCTCATCCACACCTGGTTCTCCCAGAAGTACTCTTCATTGAAGAAACGCTCCCAAGATGTCCATGGCAGAGCTATCCAAGTCCTCAAC ACTCTCAACAAGTCCAAAGGTCAGTCACGAATTCAGGCTCTTAAGGAGCTTCGACAACTTGTCTCTGCAAGTGCAAATTCCTCCTTCACCGCCAAGAAGG CCCTTGTCGACAATGGAGGCGTCTCAACTCTCTCCTCTCTATTGGGTCCTTTCACTACCCACGCAGTTGGCTCGGAGGTAATTGGGATTCTGGTTACTTT AGATCTTGATTTCTCCTCCAAGTCCAATTTGACTCAGCCTGCCAAGATTTCTTTGATGGTCGATATGTTGAATGAAGGGTCTATTGATACCAGAATCAAC TCTACCAGACTCATCCAAATGCTTATGGAAGGCAAAGATTTCGGGTCAGACAACGTTTCAAGTTGGAGTCTTTTGGTTGGATTGTTGAAGCTGGTCAAGA ATGATAGGCACCCAAATGGGGTTTTGGCTGGACTCGCATTGTTGAATGCCATTTGCTCTCGTGAATCCTTGAGAACCTCCATTGTCAGCGTAGGGGCAGT TTCCCAATTGGTTGAGCTATTGCCTGGATTCAACAGTGATTCTATAGAATTGGCGCTTCACATCCTTGAGGTTCTTTCCACTATTCCGGAGGGAAGATTG GCACTTAAGGACTGTGCTAAAACAATCCCGAATATGGTGAAATTGTTGATGAAAGTTTCTGAAACCTGTACTCAATTGGCCCTCTCCATATTGTGGGCAG TTTGCAACCTTGCCCCTGAGGAATGCGGTGCGCTTGCGGTGGATGCCGGATTGGGCGCCAAGCTACTTCTGGTGATCCAGAGCTGTTATAGTCCTGTATT GAAGCAGAGATCAGCTGAGCTTCTTAAACTCTGTAGCTCCAATTATACTGCCACGAATTTTATTTCCAAGTCAGAAGAAGGGCAGTTTCCTACATGGCTG GGATTCGAAAGCGAGATTGATACTGAAGCTAGGGCTGATGATTAA
AA sequence Show only first row Show all	>Lus10010598 pacid=23177419 polypeptide=Lus10010598 locus=Lus10010598.g ID=Lus10010598.BGIv1.0 annot-version=v1.0 MIEELESVQVPSVFICPISLEPMRDPVTLCTGQTYERSNIMKWFSMGHYTCPTTMQELWDHDLTPNATLQHLIHTWFSQKYSSLKKRSQDVHGRAIQVLN TLNKSKGQSRIQALKELRQLVSASANSSFTAKKALVDNGGVSTLSSLLGPFTTHAVGSEVIGILVTLDLDFSSKSNLTQPAKISLMVDMLNEGSIDTRIN STRLIQMLMEGKDFGSDNVSSWSLLVGLLKLVKNDRHPNGVLAGLALLNAICSRESLRTSIVSVGAVSQLVELLPGFNSDSIELALHILEVLSTIPEGRL ALKDCAKTIPNMVKLLMKVSETCTQLALSILWAVCNLAPEECGALAVDAGLGAKLLLVIQSCYSPVLKQRSAELLKLCSSNYTATNFISKSEEGQFPTWL GFESEIDTEARADD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49810			ARM repeat superfamily protein...		Lus10010598 [exp]	0	1
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031279 [exp]	1.7	0.8761
AT3G15380			Plasma-membrane choline transp...		Lus10035837 [exp]	14.2	0.8578
AT5G09995			unknown protein		Lus10016816 [exp]	14.3	0.8530
AT2G25870			haloacid dehalogenase-like hyd...		Lus10006031 [exp]	20.1	0.8302
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031846 [exp]	21.7	0.7927
AT1G22660			Polynucleotide adenylyltransfe...		Lus10025499 [exp]	25.0	0.8047
AT4G24175			unknown protein		Lus10017264 [exp]	28.2	0.8422
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10027170 [exp]	31.2	0.7952
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Lus10005014 [exp]	32.2	0.8392
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10039888 [exp]	44.5	0.8320

Compare expression of checked genes

Lus10010598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.