Plant FIBer expression Database

Lus10010599 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032711
[exp]
144 / 3e-43 ND /
Lus10005510
[exp]
58 / 6e-10 AT4G19880 162 / 3e-48 Glutathione S-transferase family protein (.1.2.3)
Lus10033036
[exp]
55 / 2e-09 ND /
Lus10003491
[exp]
53 / 7e-08 AT1G65470 635 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP B, FASCIATA 1, chromatin assembly factor-1 (FASCIATA1) (FAS1) (.1), chromatin assembly factor-1 (FASCIATA1) (FAS1) (.2)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10010599 pacid=23177422 polypeptide=Lus10010599 locus=Lus10010599.g ID=Lus10010599.BGIv1.0 annot-version=v1.0
ATGGACGTGATTCCCCTTGATTGTCCAAATCCACAAATTCTGACAATGCATTGTTTGGAATCTAGACGGTCGAGTTATCCTCCATTTACTGTTTTGCCGA
TTGTTGAATACTCGGGGAGCAGAACTATCATTCCCACGTCCAGCTTGGACATTACCAGTGGTATCAGAGCTTATCTCCGCCTCCCATTTCCACCGTCTCC
ACCGATTCCATCTCCAAAGATTCACCTTTTCCGTTCTCAGTTCTGGTCTTTTCTAATGGGGAAGGACGATCAGAAATGGAACTCGTACTGTGATCATGGG
TTGCAAACTTGTCTATTTAGTTGCTACTGTCATGTTGGTTCTAATGGTAGTAATTATTGTCTTCTTCACCAAGACTATTGCAAGACATTAAGAAGTGTAC
TCCATGTGTTTGATGAAAGTCCTATGAGTGAGTTGCCTAATGGGGAGTTCATTTCAGCATCTCCTACTCAAGATTATGGAATAGTGATTGCTGTATGGGG
TAGGGGAGTAAAGAAATGGAATTGCAATGCTGTTGGATTCAACTGTAATCAGAGTTGTTGCTGCATAGCTCTTGACTGTAAGACACAGGAAGTTGAGAAG
AAGAAGACAAAGGGGACAGAAACAGTGCCCATATACCAAGGCGACCTCTGA
AA sequence
>Lus10010599 pacid=23177422 polypeptide=Lus10010599 locus=Lus10010599.g ID=Lus10010599.BGIv1.0 annot-version=v1.0
MDVIPLDCPNPQILTMHCLESRRSSYPPFTVLPIVEYSGSRTIIPTSSLDITSGIRAYLRLPFPPSPPIPSPKIHLFRSQFWSFLMGKDDQKWNSYCDHG
LQTCLFSCYCHVGSNGSNYCLLHQDYCKTLRSVLHVFDESPMSELPNGEFISASPTQDYGIVIAVWGRGVKKWNCNAVGFNCNQSCCCIALDCKTQEVEK
KKTKGTETVPIYQGDL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10010599
[exp]
0 1
AT3G06790 plastid developmental protein ... Lus10037488
[exp]
4.5 0.7490
AT4G32050 neurochondrin family protein (... Lus10001536
[exp]
17.7 0.7292
AT2G47830 Cation efflux family protein (... Lus10009817
[exp]
17.9 0.6968
AT5G54510 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-respon... Lus10014804
[exp]
25.3 0.6185
Lus10008149
[exp]
27.8 0.7107
AT1G68930 pentatricopeptide (PPR) repeat... Lus10030908
[exp]
28.0 0.7153
AT2G42450 alpha/beta-Hydrolases superfam... Lus10024878
[exp]
28.5 0.6638
AT4G10940 RING/U-box protein (.1) Lus10001535
[exp]
31.7 0.6991
Lus10007551
[exp]
32.5 0.6553
AT5G28690 Protein of unknown function (D... Lus10005536
[exp]
42.1 0.5400

Lus10010599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.