Plant FIBer expression Database

Lus10010600 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G27050 61 / 9e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035208
[exp]
107 / 3e-29 AT3G27050 215 / 2e-71 unknown protein
Lus10042337
[exp]
57 / 6e-10 AT5G41310 96 / 1e-21 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Lus10032042
[exp]
52 / 9e-09 AT3G27050 64 / 2e-13 unknown protein
Lus10027086
[exp]
0 / 1 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G329600
[exp]
82 / 6e-20 AT3G27050 231 / 3e-78 unknown protein
PFAM info
Representative CDS sequence
>Lus10010600 pacid=23177423 polypeptide=Lus10010600 locus=Lus10010600.g ID=Lus10010600.BGIv1.0 annot-version=v1.0
ATGGGGGTTGATCCTACCTTCGGAATTTCTTGCTTGGGTAAAGTGCACTCTGTGTTTGAGAATGACATGGATTTGGTGATTCAGTCTTACAAATTAGTGG
CTTGTGATGAGCCTGAACTTGGACCAGAAGAATTTGCTGATAAAATGCATAATCAAGAAAAGCTTCATGAGAAGCAACATCAAGAGGCTTGTAAGCAAGA
ATCTGTCACTGCTAAGAGAATGCAGAAGCTACAGTTAAGGCTGGTTTTTGAATTGTGTGGCAGCCATGTTAAGGAGTTCATGTCTTGTCAATGTTTTAGC
TGTGCTGATGTTTTTACCCTTGGGAGAGGCAACCTTCTAAATCATAAAGAGCCTTATAAGGATTTTTGGTACAACAAGAGTGGAAAGAGAGCTTCACATG
TTGTTTATAGGATTCAAACTGCAAAGTCATTGGAGTATACTCATTGTTGTTGCCATTGTTGCAGTCAATGGGTGCAATTCGAGTAA
AA sequence
>Lus10010600 pacid=23177423 polypeptide=Lus10010600 locus=Lus10010600.g ID=Lus10010600.BGIv1.0 annot-version=v1.0
MGVDPTFGISCLGKVHSVFENDMDLVIQSYKLVACDEPELGPEEFADKMHNQEKLHEKQHQEACKQESVTAKRMQKLQLRLVFELCGSHVKEFMSCQCFS
CADVFTLGRGNLLNHKEPYKDFWYNKSGKRASHVVYRIQTAKSLEYTHCCCHCCSQWVQFE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G27050 unknown protein Lus10010600
[exp]
0 1
AT2G41600 Mitochondrial glycoprotein fam... Lus10042041
[exp]
4.2 0.6661
AT1G61700 RNA polymerases N / 8 kDa subu... Lus10038195
[exp]
12.2 0.6547
AT2G38280 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5... Lus10005043
[exp]
14.2 0.6569
AT3G02100 UDP-Glycosyltransferase superf... Lus10015752
[exp]
18.2 0.6083
AT5G40080 Mitochondrial ribosomal protei... Lus10034241
[exp]
19.1 0.6184
AT4G38370 Phosphoglycerate mutase family... Lus10023935
[exp]
27.5 0.6245
AT5G61310 Cytochrome c oxidase subunit V... Lus10040012
[exp]
27.7 0.6087
AT5G09920 NRPB4, ATRPB15.... RNA polymerase II, Rpb4, core ... Lus10005796
[exp]
30.4 0.6239
AT3G02950 AtTHO7 Tho complex subunit 7/Mft1p (.... Lus10012882
[exp]
31.9 0.6029
AT2G39170 unknown protein Lus10018298
[exp]
33.4 0.5842

Lus10010600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.