Plant FIBer expression Database

Lus10010603 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032838
[exp]
97 / 5e-25 AT1G40087 46 / 9e-06 Plant transposase (Ptta/En/Spm family) (.1)
Lus10006526
[exp]
79 / 3e-18 ND 38 / 0.005
Lus10024976
[exp]
77 / 7e-17 AT1G40087 91 / 5e-20 Plant transposase (Ptta/En/Spm family) (.1)
Lus10035238
[exp]
59 / 7e-11 AT1G40087 42 / 2e-04 Plant transposase (Ptta/En/Spm family) (.1)
Lus10003828
[exp]
57 / 2e-10 ND /
Lus10035253
[exp]
54 / 4e-09 ND /
Lus10024755
[exp]
54 / 4e-09 ND /
Lus10019363
[exp]
43 / 2e-05 ND /
Lus10025346
[exp]
42 / 6e-05 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10010603 pacid=23177429 polypeptide=Lus10010603 locus=Lus10010603.g ID=Lus10010603.BGIv1.0 annot-version=v1.0
ATGTCGCCAAAGATCAAGACATGTGCATGGGAGCAATTTGTGCTGGACGGATTTGGGGGAAGTGAAGGCTCAGAACGAGCCAAGATGAAAATAGTGCCGG
AAAAGCACTTCCCATTTGAGTGGATTGTTAATAATCCACCGACAGGCTGTCCAATGGCTGATTGGATGACGTTCTTGGATCGAGTAAATGGTGAGGAGTT
TGAGCAAATGGCCGGTTCCATAGCTCCTACCTCCATTATTCCTGCCACTGCTTCTTCCTCTACCTCTACCTACGTTTCAACGACAAATCCTATTTCTCCG
TTTGATCCAAGTGAAAGAGATCTGTACTATCAGCCTTCCCGGCTGGTGTCCCAACAGAGCAATCCGATGGGTTACTTTTCTCTCTCTCCACAACCCGATA
TGGCTCGATTTCGACCACTCTATGAAAAAGGTGCATGTTTTGATGACTTGACTGAAATCATGACTAGTGTCGCTAATGCTCCACAACGCCAAGGCCAAGG
AGAAGGTCAAAGTCGCCCTTGA
AA sequence
>Lus10010603 pacid=23177429 polypeptide=Lus10010603 locus=Lus10010603.g ID=Lus10010603.BGIv1.0 annot-version=v1.0
MSPKIKTCAWEQFVLDGFGGSEGSERAKMKIVPEKHFPFEWIVNNPPTGCPMADWMTFLDRVNGEEFEQMAGSIAPTSIIPATASSSTSTYVSTTNPISP
FDPSERDLYYQPSRLVSQQSNPMGYFSLSPQPDMARFRPLYEKGACFDDLTEIMTSVANAPQRQGQGEGQSRP

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10010603
[exp]
0 1
AT1G09790 COBL6 COBRA-like protein 6 precursor... Lus10010097
[exp]
1.0 0.9143
AT3G52740 unknown protein Lus10022717
[exp]
2.4 0.8704
AT5G20950 Glycosyl hydrolase family prot... Lus10023604
[exp]
3.7 0.8474
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Lus10004251
[exp]
4.2 0.8475
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Lus10040525
[exp]
4.9 0.8622
AT1G20925 Auxin efflux carrier family pr... Lus10030715
[exp]
5.9 0.8597
AT4G25640 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, ... Lus10027504
[exp]
6.3 0.7848
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Lus10040526
[exp]
7.9 0.8660
AT4G37220 Cold acclimation protein WCOR4... Lus10027945
[exp]
9.0 0.8380
AT5G46290 KAS1, KAS I, KA... KETOACYL-ACP SYNTHASE 1, 3-ket... Lus10003195
[exp]
9.5 0.8258

Lus10010603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.