Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37680 444 / 5e-156 HHP4 heptahelical protein 4 (.1.2) AT4G38320 413 / 7e-144 HHP5 heptahelical protein 5 (.1) AT4G30850 244 / 6e-78 HHP2 heptahelical transmembrane protein2 (.1.2) AT2G24150 229 / 4e-72 HHP3 heptahelical protein 3 (.1) AT5G20270 211 / 2e-65 HHP1 heptahelical transmembrane protein1 (.1) AT2G40710 166 / 3e-51 Haemolysin-III related integral membrane protein (.1) AT4G38290 134 / 1e-38 Haemolysin-III related integral membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025206 [exp] 442 / 7e-155 AT4G37680 584 / 0.0 heptahelical protein 4 (.1.2) Lus10011713 [exp] 438 / 3e-153 AT4G37680 585 / 0.0 heptahelical protein 4 (.1.2) Lus10008057 [exp] 251 / 4e-80 AT5G20270 394 / 6e-137 heptahelical transmembrane protein1 (.1) Lus10038120 [exp] 203 / 3e-62 AT5G20270 377 / 3e-131 heptahelical transmembrane protein1 (.1) Lus10036605 [exp] 168 / 1e-48 AT4G30850 259 / 3e-84 heptahelical transmembrane protein2 (.1.2) Lus10035823 [exp] 71 / 8e-13 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1) Lus10007709 [exp] 42 / 0.0002 ND 47 / 2e-10
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G006000 [exp] 458 / 5e-161 AT4G37680 632 / 0.0 heptahelical protein 4 (.1.2) Potri.007G005800 [exp] 446 / 2e-156 AT4G37680 611 / 0.0 heptahelical protein 4 (.1.2) Potri.018G124754 [exp] 266 / 5e-86 AT5G20270 384 / 4e-133 heptahelical transmembrane protein1 (.1) Potri.T124407 [exp] 265 / 6e-86 AT5G20270 385 / 2e-133 heptahelical transmembrane protein1 (.1) Potri.018G102400 [exp] 254 / 1e-81 AT4G30850 374 / 5e-129 heptahelical transmembrane protein2 (.1.2) Potri.006G064400 [exp] 245 / 4e-78 AT5G20270 369 / 2e-127 heptahelical transmembrane protein1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF03006 [flax] [poplar] HlyIII Haemolysin-III related
Representative CDS sequence Show only first row Show all	>Lus10010605 pacid=23177432 polypeptide=Lus10010605 locus=Lus10010605.g ID=Lus10010605.BGIv1.0 annot-version=v1.0 ATGGATGATGATGGGTACGAGAAATTGGGGCCAAATTACGAAGAAGATGGAAAGAAGGGAAAGGGGAAGAAGGGGAAATACTATCAGCTGGTTGAATACA GTGCATTACCCAGTTTCATGAAGGACAACGAGTACATCCATCGCTACTACAGAGCCGAATGGCCTTTGAAACACCTCCTCCTTAGCATCTTCACCATCCA CAACGAGACCCTCAATGTCTGGACGCATTTGCTTGGCTTCTTTCTCTTCTTGTTCCTCACCATTTACACGGCGATGAAAGCCCCCACCAATGTTGCGGAT CTCAATTTCTTGCGTCACGTGTTGAGGAATTCTGGTTTCTGCAATCAACTAGCGAGTTGCTTACCTTCTTTACCAAACATGCAACATCTTCAGCCTTCCT TGTTCACCAATTGGAGTCTTGTTGTTAAGCTTCTCAACCACTGTCTCCCTGATTCACTCATAAACATGTACCAGTACCCCACTCACTCTCTCCATCTGCA GCAAGGAGACAATACAAGAGAAGATGCTATGGTAGCTCCCCTCCTCTTGCAGTTGCAGCAGCCCATCACTAGATGGCCATTCTACGCATTCATGGTGGGT GCAATGTTCTGCCTCCTAGCCAGCACCATCTGCCACCTCCTCTCCTGCCATTCTGAGCGGATGTCCTACATTGTCCACCGATTTGACTATGCTGGAATTG CAGCTCTGATCGCCACTTCATTCTACCCACCAGTCTACTACTCCTTCATGTGCAATCCTTTCTTCTGCATCCTCTACCTGGGATTGATCACAGTGATGGG GATTGTAACCATCGTCTTCTCCTTGCTGCCTACGTTCCAGAGGCCTGAATTTAGGAGCTTTCGGGCATCACTCTTCTTCGGGATGGGGGTTTCAGGGGTA GCTCCCATACTTCACAAGTTGGTGTTGTATGGGAACCAGCCGGAAGCACTGCAAACGACTTGTTACGAAGTACTGATGGGGGTTTTGTATGGTTTGGGGG CTTTGGTTTATGCGAAGAGGGTTCCTGAGAGATGGATGCCTGGAAAATTCGACATCGCTGGGCAGAGTCACCAGCTGTTTCATCTTCTGGTAGTTGCTGC TGCTTTTACTCATTACCAGGCTGGGCTTGTTTACGTGAAATGGAGGGATTTGAATGGTTGTTAA
AA sequence Show only first row Show all	>Lus10010605 pacid=23177432 polypeptide=Lus10010605 locus=Lus10010605.g ID=Lus10010605.BGIv1.0 annot-version=v1.0 MDDDGYEKLGPNYEEDGKKGKGKKGKYYQLVEYSALPSFMKDNEYIHRYYRAEWPLKHLLLSIFTIHNETLNVWTHLLGFFLFLFLTIYTAMKAPTNVAD LNFLRHVLRNSGFCNQLASCLPSLPNMQHLQPSLFTNWSLVVKLLNHCLPDSLINMYQYPTHSLHLQQGDNTREDAMVAPLLLQLQQPITRWPFYAFMVG AMFCLLASTICHLLSCHSERMSYIVHRFDYAGIAALIATSFYPPVYYSFMCNPFFCILYLGLITVMGIVTIVFSLLPTFQRPEFRSFRASLFFGMGVSGV APILHKLVLYGNQPEALQTTCYEVLMGVLYGLGALVYAKRVPERWMPGKFDIAGQSHQLFHLLVVAAAFTHYQAGLVYVKWRDLNGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10010605 [exp]	0	1
AT5G26620			unknown protein		Lus10001512 [exp]	2.2	0.8686
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10003005 [exp]	4.2	0.8554
AT1G70820			phosphoglucomutase, putative /...		Lus10020414 [exp]	4.6	0.8306
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10036862 [exp]	7.5	0.8394
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023230 [exp]	8.1	0.8103
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007659 [exp]	8.3	0.8520
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10017882 [exp]	9.2	0.8340
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10023644 [exp]	10.4	0.8177
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	10.6	0.8027
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10024801 [exp]	12.2	0.8089

Compare expression of checked genes

Lus10010605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.