Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032535 [exp] 127 / 4e-36 ND / Lus10009735 [exp] 94 / 3e-24 ND / Lus10031024 [exp] 89 / 5e-21 AT1G48120 58 / 1e-09 hydrolases;protein serine/threonine phosphatases (.1) Lus10001602 [exp] 88 / 1e-20 ND / Lus10017785 [exp] 87 / 3e-19 AT4G00020 532 / 4e-174 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2) Lus10017810 [exp] 81 / 1e-18 AT1G48120 46 / 8e-06 hydrolases;protein serine/threonine phosphatases (.1) Lus10039412 [exp] 73 / 5e-16 ND / Lus10003103 [exp] 71 / 3e-15 ND / Lus10025539 [exp] 70 / 1e-14 ND 35 / 0.009
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010609 pacid=23177424 polypeptide=Lus10010609 locus=Lus10010609.g ID=Lus10010609.BGIv1.0 annot-version=v1.0 ATGCCTAATATCGGCTGCTTATGTCCACCTATCGTACCTGCTAGTGTTGTGAGAGGAGAGGCCGTTTGCTTGAGGGCAGCGGTTCTGTCGTGGCTTTATC GGGAGGTCGATTGTTCAGCGTTCAGGTTGGAGTCTTTTGGTACGAAGGGGGTTGGTGATATCGGTGGTTATATTGTGTTGCTTACAGCTTGGGTACTGGA GAGGTTCCCGGGCATACTGTGCATGAGGATAGTCTCAGAGGTCCAGATGCACTGGGACTTATTGTCAACACCCGACTATATCGATGGAAGAACTGGATGC ATGGCAAGAGTCGACATCTCTTACTCCCAGAGTACAGACAGTTGTTCGACGAGGGCACCCCGTTCGTGCCGTGCTGATTCGACACACTCTCCTGCGGCAC ATAGGGTCGTTGGTTCCCTGATTTTGCCCTGCATGACGATCCGAGATGACACATACATTCCGTCTGTCTGTCTCCCCAAATGCCATCTCCATATCCCTCT GCTTCTCATACAATGTCTTTCTATACAAGATCTAACGCTGGAAAAGGTGGAAAATCTCATCTTGGATCAAACGGATCCGAAATTGTGGCCTTGGCCGGAC ATGGTGCATAACCGCATCCGCGATGACATTCACATCTTGTTGGGTAAATTTCATGTTGTGCCCGCTTCCGTCACATGTGTGATGTGGATTCTACTGCCGA ACCATCCAGAACCCATCATCTGCACTATTGGTGACGCGTATCCTCCATGGATAGTTGTTGGTTTTGTACGAATAACACCTGACCTCCAACTCCCAAGTCT TTGA
AA sequence Show only first row Show all	>Lus10010609 pacid=23177424 polypeptide=Lus10010609 locus=Lus10010609.g ID=Lus10010609.BGIv1.0 annot-version=v1.0 MPNIGCLCPPIVPASVVRGEAVCLRAAVLSWLYREVDCSAFRLESFGTKGVGDIGGYIVLLTAWVLERFPGILCMRIVSEVQMHWDLLSTPDYIDGRTGC MARVDISYSQSTDSCSTRAPRSCRADSTHSPAAHRVVGSLILPCMTIRDDTYIPSVCLPKCHLHIPLLLIQCLSIQDLTLEKVENLILDQTDPKLWPWPD MVHNRIRDDIHILLGKFHVVPASVTCVMWILLPNHPEPIICTIGDAYPPWIVVGFVRITPDLQLPSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010609 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010756 [exp]	4.2	1.0000
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10001280 [exp]	4.7	1.0000
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10002957 [exp]	7.1	1.0000
AT3G11680			Aluminium activated malate tra...		Lus10013347 [exp]	7.7	1.0000
AT3G20760			Nse4, component of Smc5/6 DNA ...		Lus10004185 [exp]	8.8	1.0000
					Lus10034870 [exp]	10.2	1.0000
					Lus10009800 [exp]	11.2	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	12.6	1.0000
					Lus10014761 [exp]	12.7	1.0000
					Lus10010778 [exp]	13.0	1.0000

Compare expression of checked genes

Lus10010609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.