Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43190 288 / 3e-95 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G15710 101 / 9e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27340 82 / 4e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 56 / 1e-08 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT3G61590 45 / 7e-05 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007740 [exp] 278 / 1e-89 AT5G43190 292 / 2e-94 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018682 [exp] 202 / 5e-63 AT5G43190 204 / 2e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 97 / 4e-22 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 96 / 8e-22 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015775 [exp] 71 / 2e-13 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007755 [exp] 71 / 3e-13 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10037030 [exp] 70 / 6e-13 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 65 / 3e-11 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G016200 [exp] 363 / 5e-125 AT5G43190 277 / 2e-90 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G118700 [exp] 360 / 1e-123 AT5G43190 352 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G112400 [exp] 94 / 4e-21 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 87 / 1e-18 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G057100 [exp] 84 / 7e-18 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G171300 [exp] 76 / 4e-15 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 63 / 7e-11 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G074100 [exp] 56 / 1e-08 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.002G166500 [exp] 49 / 3e-06 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G093200 [exp] 49 / 3e-06 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10010610 pacid=23177427 polypeptide=Lus10010610 locus=Lus10010610.g ID=Lus10010610.BGIv1.0 annot-version=v1.0 ATGGATCCCGGAATATGGAGTCAGCTACCGGTGGAAATCCTGGACAACATACTCTCACTATTGCCTCTGAAAACCTTCATGACTCTGAGATCCACTTGCA GGCACTTCGATTCCCTCATCTTCTCCCCTTCCTTCATCTCCAAACACTCTTCTTCTCCTCCTTCCTTCCTCTTACTCTCCCACCCTCAGTTCCCTTCCAA AGTCGGCCTCTACGATTCCTCCACCGCCACCTGGGGTTCAATCTCCCTCTCCCCACGCGCCACGCTCCTCTCTTCCTCCAACGGTCTCTTCTGCCTCTCC CTCCCCGATCCCTCTTCTTTCCTTATCTCGAATTTCCTTACCAAATCATCACGCGCCATCAGATACCCAATCCTCCCTTTCGATTTCGACTCCCTAACCC TAATTCCCTCTAAATCAGGCCGCGGTTACAAAATCTTCGCCCACTGCAGTACTAATGGCTCTTTCATCTACGACTCGACCACCCAATCATGGCTCCAATT CGAAGGATTCTCGAATTCCCTCTGCCGTCAGGGAGTGGCTCTGTTCAACGGATGGATCTACTTCACGACGGAAGAGCCGTTTAAGATAGTGGGATTCAAT TTGAGTTCCGGGAAATGGGGAAGGCTAGCAGTTGAGATGCCGGAGCAAGGAATGAGTTTCGTGAGGGTGGTGAGTAACGACGACGGGGATCAGAGGAAGC TGTATTTGGTGGGAGGAGTCGGGGAGAATGGGATATCGAAGACGGTGAAGCTGTGGGAAATGGTTGGCTCCGGTGGGAAGTGGGTTGAAGTAGAGAAGGT GCCAGAGATGATGTGCAGGAAATTTGTGTCGGTATGTTACCACAATTACGAGCATGTCTACTGTTTCTGGCACCAGGGAATGATATGTATATGCTGCTAT ACTTGGCCGGAGATACTTTATTACAAGGTTGGGAGGAGGAGTTGGCATTGGCTACCCAAATGCCCTTCATTGACCCAGAAATGGAGCTGTGGATTCAGAT GGTTCTCATTTCTTCCTCAGTTGCAAGCCCTGGTCTAG
AA sequence Show only first row Show all	>Lus10010610 pacid=23177427 polypeptide=Lus10010610 locus=Lus10010610.g ID=Lus10010610.BGIv1.0 annot-version=v1.0 MDPGIWSQLPVEILDNILSLLPLKTFMTLRSTCRHFDSLIFSPSFISKHSSSPPSFLLLSHPQFPSKVGLYDSSTATWGSISLSPRATLLSSSNGLFCLS LPDPSSFLISNFLTKSSRAIRYPILPFDFDSLTLIPSKSGRGYKIFAHCSTNGSFIYDSTTQSWLQFEGFSNSLCRQGVALFNGWIYFTTEEPFKIVGFN LSSGKWGRLAVEMPEQGMSFVRVVSNDDGDQRKLYLVGGVGENGISKTVKLWEMVGSGGKWVEVEKVPEMMCRKFVSVCYHNYEHVYCFWHQGMICICCY TWPEILYYKVGRRSWHWLPKCPSLTQKWSCGFRWFSFLPQLQALV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43190			Galactose oxidase/kelch repeat...		Lus10010610 [exp]	0	1
					Lus10038116 [exp]	5.4	0.7634
					Lus10017454 [exp]	7.9	0.7544
AT3G02910			AIG2-like (avirulence induced ...		Lus10018276 [exp]	14.6	0.7404
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10029276 [exp]	21.8	0.6551
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	22.6	0.7459
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	27.0	0.7235
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10005088 [exp]	28.5	0.7388
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Lus10018355 [exp]	32.5	0.7342
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017281 [exp]	32.8	0.7208
AT5G36290			Uncharacterized protein family...		Lus10026995 [exp]	33.7	0.6989

Compare expression of checked genes

Lus10010610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.