Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27190 69 / 2e-15 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 64 / 1e-13 Leucine-rich repeat protein kinase family protein (.1) AT3G28450 57 / 3e-11 Leucine-rich repeat protein kinase family protein (.1) AT5G16500 51 / 3e-09 Protein kinase superfamily protein (.1) AT3G02810 50 / 5e-09 Protein kinase superfamily protein (.1) AT5G02290 50 / 6e-09 NAK Protein kinase superfamily protein (.1.2) AT5G07280 49 / 1e-08 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G55610 49 / 2e-08 BRL1 BRI1 like (.1.2) AT1G61590 48 / 4e-08 Protein kinase superfamily protein (.1) AT2G01950 48 / 5e-08 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030811 [exp] 79 / 8e-19 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013288 [exp] 76 / 3e-18 AT1G27190 390 / 2e-133 Leucine-rich repeat protein kinase family protein (.1) Lus10034757 [exp] 49 / 1e-08 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10033294 [exp] 49 / 2e-08 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1) Lus10033533 [exp] 49 / 2e-08 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039132 [exp] 48 / 4e-08 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038726 [exp] 48 / 4e-08 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10034897 [exp] 48 / 5e-08 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 48 / 6e-08 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G074400 [exp] 69 / 2e-15 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G081700 [exp] 67 / 6e-15 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 67 / 7e-15 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 65 / 3e-14 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G128500 [exp] 51 / 2e-09 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.007G144000 [exp] 50 / 2e-09 AT5G48380 162 / 4e-47 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 50 / 6e-09 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.002G240000 [exp] 50 / 8e-09 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.005G086500 [exp] 50 / 1e-08 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G141200 [exp] 49 / 1e-08 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010615 pacid=23143647 polypeptide=Lus10010615 locus=Lus10010615.g ID=Lus10010615.BGIv1.0 annot-version=v1.0 ATGAACAGGCTAGGACAGTTACGCCATCCGAATTTGGTTCCATTGTTGGGATTCTGCGCTGTGGAGGAAGAAAGGTTACTCGTTTACAAGCATATAACAG GCGGGGACTCTGTATTCAACGGAGTTGTGCTTCTCGAATTGGTCACAGGGCAGAAGCCATTGGATGTTGTGAGATTAATGCCGATGAAGCGTTCAAAGGG AATTTAG
AA sequence Show only first row Show all	>Lus10010615 pacid=23143647 polypeptide=Lus10010615 locus=Lus10010615.g ID=Lus10010615.BGIv1.0 annot-version=v1.0 MNRLGQLRHPNLVPLLGFCAVEEERLLVYKHITGGDSVFNGVVLLELVTGQKPLDVVRLMPMKRSKGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27190			Leucine-rich repeat protein ki...		Lus10010615 [exp]	0	1
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10032653 [exp]	1.4	0.7514
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10043171 [exp]	3.2	0.7772
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10015397 [exp]	3.7	0.6629
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10022718 [exp]	4.6	0.7034
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	9.5	0.7447
AT4G20020			unknown protein		Lus10037713 [exp]	10.4	0.6968
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10000216 [exp]	11.3	0.6348
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	12.0	0.7309
					Lus10001343 [exp]	16.4	0.7200
AT1G50660			unknown protein		Lus10002072 [exp]	17.5	0.7367

Compare expression of checked genes

Lus10010615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.