Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38900 265 / 2e-83 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G21230 242 / 1e-74 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G43700 155 / 1e-43 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT1G06070 149 / 2e-40 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G31370 147 / 2e-40 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT2G40620 146 / 6e-40 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 139 / 2e-38 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT2G13150 119 / 7e-31 bZIP AtbZIP31 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12940 120 / 8e-31 bZIP UNE4 unfertilized embryo sac 4, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12900 101 / 3e-24 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033174 [exp] 729 / 0 AT4G38900 283 / 7e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10012390 [exp] 483 / 2e-169 AT4G38900 337 / 8e-111 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10024314 [exp] 457 / 2e-159 AT4G38900 337 / 1e-110 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10000069 [exp] 317 / 4e-108 AT4G38900 202 / 3e-62 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10018061 [exp] 312 / 4e-101 AT4G38900 529 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10042057 [exp] 310 / 3e-100 AT4G38900 522 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10012391 [exp] 221 / 1e-70 AT4G38900 196 / 3e-60 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10028595 [exp] 164 / 8e-47 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10018899 [exp] 159 / 4e-45 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125400 [exp] 318 / 3e-103 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.004G163800 [exp] 315 / 6e-102 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.019G130000 [exp] 154 / 2e-42 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G069500 [exp] 152 / 2e-42 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.005G190700 [exp] 151 / 4e-42 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.017G027400 [exp] 152 / 9e-42 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G156900 [exp] 150 / 4e-41 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 147 / 1e-40 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 148 / 3e-40 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 86 / 2e-18 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10010616 pacid=23143637 polypeptide=Lus10010616 locus=Lus10010616.g ID=Lus10010616.BGIv1.0 annot-version=v1.0 ATGTGTGCTACCATGCGACAATCTTCACCAAATCTTGATCCTCGAGAGAGCAACAAAAGGATTGGATTGCCTCCTTCCTATCCCAACAACTCGCATTTCT TTGCTGACCAGCAACATCGGCAGGGAGGGACTTCTCATTTGAGGTCATTGTCACAATCATCAATATTCTCTATAGATTTCCGTCCCATGGAACAAGATAA TGCTGCTTCTTCCCAGGGGATTCTGGCTCCTGTCTCTTCGAGGGTCAATGATGGTGGGTTGCCTCCTCTTAGAGCAGCAGCTCATAGGAGGGCTATCAGT GATACTGTTCCATTGGGGTTTTGTGATATGATTCAATCTTCCCCTCAATTGGTACCGATTCGTGGTCAGGTGGGTGGGTTTAATCAATTGGAATTGGTGA AGCAGGAATCCGAGGTTTCTGCCACGGATGAGATGTTGATGATGAGTGCTTATATGCATATGGATAATGTTGATCCATTGAATTCATCTGGCACGGAGGA TAATAAGGATTTGGATAGCAGGGCTAGCAGTACCAAGACTAATGGAACAGAAAGCAGTGATAATGAGGCGGAGAGTCATGTCAAAGGGATTATGAGAAGT GCAGATGGCGAGATTGGACCTGCTGGTCGACACTGTCGAAGTGTGTCGATGGATAGCTTTATGGGAGGTTTGCGGTTAGATGAGGAGTCGATGATCATGA AGCTTCCTCCTATGGGGGTTCGAGTTGGTCAACAACACTCCCCTAGCAGCAGCTCAATGCAAGGGAATCTCAGCAAATTCAACTTGGAGTTCGGAAATGG CGAATTTACTGAAACCGAGCTGAAGAAGATTACGTCGAATGACAAGCTGACGGAGCTTGCAATGGCTGATCCAAAGCGTGTTAAAAGGATCCTGGCGAAT CGTTTATCTGCTGCCCGGTCCAAGGAGCGAAAGATGAGGTACATTGCTGAATTAGAGCTGAAGGTGCAAGCTTTACAGGCTGAAGCAACTACCTTGTCCG CCCAAGTTACGGTCTTGCAGCGTGATTCGGCAAATCTTACGAGCCAGAACAATGAACTCAAATTCAGGCTACAGTCAATTGAACAACAGGCGCAACTCAA AGATGCTCTGAATGAAGCATTAGTTGCAGAAGTCCAACGACTTGGGCTTGCAGCATCAACTCATCATCATCATCAGCAGCAGCAACTTCCGGTTAATCAT CCGATGATGCAACCGGGCCAGGCAAACACATATCAGCAGCAGCAGGAGCTAAACCAAGCACATAACAGCAACTAA
AA sequence Show only first row Show all	>Lus10010616 pacid=23143637 polypeptide=Lus10010616 locus=Lus10010616.g ID=Lus10010616.BGIv1.0 annot-version=v1.0 MCATMRQSSPNLDPRESNKRIGLPPSYPNNSHFFADQQHRQGGTSHLRSLSQSSIFSIDFRPMEQDNAASSQGILAPVSSRVNDGGLPPLRAAAHRRAIS DTVPLGFCDMIQSSPQLVPIRGQVGGFNQLELVKQESEVSATDEMLMMSAYMHMDNVDPLNSSGTEDNKDLDSRASSTKTNGTESSDNEAESHVKGIMRS ADGEIGPAGRHCRSVSMDSFMGGLRLDEESMIMKLPPMGVRVGQQHSPSSSSMQGNLSKFNLEFGNGEFTETELKKITSNDKLTELAMADPKRVKRILAN RLSAARSKERKMRYIAELELKVQALQAEATTLSAQVTVLQRDSANLTSQNNELKFRLQSIEQQAQLKDALNEALVAEVQRLGLAASTHHHHQQQQLPVNH PMMQPGQANTYQQQQELNQAHNSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10010616 [exp]	0	1
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	6.6	0.8170
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10018741 [exp]	19.4	0.7861
AT3G02710			ARM repeat superfamily protein...		Lus10010958 [exp]	19.7	0.7980
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10017351 [exp]	21.4	0.7591
AT3G27390			unknown protein		Lus10014881 [exp]	33.6	0.7574
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10023257 [exp]	35.2	0.7809
AT1G17820			Putative integral membrane pro...		Lus10036188 [exp]	44.4	0.7757
AT3G48200			unknown protein		Lus10035212 [exp]	52.3	0.7761
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10013321 [exp]	56.0	0.7622
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	65.2	0.7647

Compare expression of checked genes

Lus10010616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.