Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64230 254 / 2e-81 unknown protein AT3G19920 146 / 7e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033177 [exp] 648 / 0 AT5G64230 296 / 2e-96 unknown protein Lus10010181 [exp] 150 / 6e-42 AT3G19920 311 / 5e-104 unknown protein Lus10017384 [exp] 150 / 7e-41 AT3G19920 327 / 8e-108 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053200 [exp] 353 / 3e-120 AT5G64230 244 / 1e-77 unknown protein Potri.007G073600 [exp] 82 / 1e-17 AT3G19920 119 / 9e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010617 pacid=23143660 polypeptide=Lus10010617 locus=Lus10010617.g ID=Lus10010617.BGIv1.0 annot-version=v1.0 ATGGACGGCTCTCCGGCCAACGTCGCACCTTTGATTCTCAACCTGTTCGCCACTTTGTTTATCCACGCTGATAGAACCTTTCTCCAATTAGCCAACAAGT ACAAGATCCTCGAGCTGCTCCGCCGCGTCGTCGTTACTTCTTTCATCTTCATCCTTGGATTCATCCCATCTCTGTTTCCGCTTAAATCCCCCAAGAAGAA GGAGGTTTCTACTCAGAAGCCGCCGTTCCGTGATTCATCTGCAGAAGGCGGCTCCGGCGGGGATACGAGTATCGCTCGAGCGCTCACGCAGCTCTTGACG ATTGCTAATGAAATTCCGGTGAGTTCTCGCAAGTACGAGATAGTCCGATCTCTGGCGGAGAAGATGATCGACGACAATCATCGCGAGAACGTCGAAGCTC TCCACGAGATTAACCGTACGGTTCTCTCGGCGGCGTTTACAAGGTCGCTCGCCCAACTTGAGGCTGCTTTTGTCGAACTAGGGTTTGAAAACAGCGGGAG CGACGGAGCCGGGCAGGTTGTCTTGAACAAATTGAACCGAGTTGTGAAATCGGTTCGGTTGATTGGGTATGGGAGCTGGGGTTTAACCGGGGGGAAGGAG AAGGATGACCTGGAACGGTCCAATTGCGCGGCAGAGAAAGTAGCTGCGGAGCTGCTGTGGCTGGCGCAGAAATTGATGGAGTGTGGGTGTGTGGAGGAAG CTGTTTCGAAGTGGGCAATGGCGTCTAAGTTAGCCTGGCTTTCTCTTTCTGTCGAGCCCCGGCTGCAGGGCTCGTTGGTGAAAGTCTCAGCATTCCTCTT CAAGCATGCCAAAGACTTGGGGTTGGAAGAGATGGAGGTGAGCCAGAAAGTGCAGTGGCGTCGGACAAAGCTGGGGATGCTGATGTCGTGGCTGCCATTG CTGTGCAGAGCTACGACAGGCGTGGATGTTCCGGTGCTGACTAGAGAGGAGAGGGCAGAATTGGAGAGGGTGCTTGAAGAGATGGTGGAAATCTTGGAGG TAAAAGAGAAGGAGCAAGTGTTGTTCCTGTGGCTGCAGCACTTCACCCACAGTCCGTCTTCGGATTGGCCTAACCTCCATTCCTCTTACGCACGCTGGTG CAATGCTTCTCGTCGGCTCTTGGTCCTCAAGTGA
AA sequence Show only first row Show all	>Lus10010617 pacid=23143660 polypeptide=Lus10010617 locus=Lus10010617.g ID=Lus10010617.BGIv1.0 annot-version=v1.0 MDGSPANVAPLILNLFATLFIHADRTFLQLANKYKILELLRRVVVTSFIFILGFIPSLFPLKSPKKKEVSTQKPPFRDSSAEGGSGGDTSIARALTQLLT IANEIPVSSRKYEIVRSLAEKMIDDNHRENVEALHEINRTVLSAAFTRSLAQLEAAFVELGFENSGSDGAGQVVLNKLNRVVKSVRLIGYGSWGLTGGKE KDDLERSNCAAEKVAAELLWLAQKLMECGCVEEAVSKWAMASKLAWLSLSVEPRLQGSLVKVSAFLFKHAKDLGLEEMEVSQKVQWRRTKLGMLMSWLPL LCRATTGVDVPVLTREERAELERVLEEMVEILEVKEKEQVLFLWLQHFTHSPSSDWPNLHSSYARWCNASRRLLVLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64230			unknown protein		Lus10010617 [exp]	0	1
AT5G64230			unknown protein		Lus10033177 [exp]	1.0	0.9243
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	2.4	0.8646
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	3.5	0.8537
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	5.7	0.8460
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008022 [exp]	7.5	0.7901
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10021801 [exp]	10.5	0.8011
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	11.6	0.8312
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10013488 [exp]	17.3	0.8118
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10009863 [exp]	18.0	0.7700
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	19.4	0.7928

Compare expression of checked genes

Lus10010617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.