Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39570 40 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016220 [exp] 117 / 2e-32 AT5G39570 82 / 7e-17 unknown protein Lus10029322 [exp] 77 / 1e-17 AT5G39570 144 / 2e-40 unknown protein Lus10017294 [exp] 42 / 5e-05 ND 39 / 0.001
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G127400 [exp] 44 / 6e-06 AT5G39570 139 / 4e-37 unknown protein Potri.017G087200 [exp] 43 / 2e-05 AT5G39570 112 / 3e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010622 pacid=23143662 polypeptide=Lus10010622 locus=Lus10010622.g ID=Lus10010622.BGIv1.0 annot-version=v1.0 ATGAGAGAAACTGAATCCGAATACGGAGCTGGATATGGCCGGAAGCAGGAACCGGAATCTGAGTACGGATCCGGCTATGGCCGTAAGCAGGAACCAGAAT CTGAGTACGGATCTGGCTACGGTCATAGGCAGGAATCTAAATACGGATCAAAAGAATACGGCCGAAAACCGGCAGAGCTGAATACGGATCTGGTTATGGC CGTAACCAGGACTCCCAGTATGGCCGAAGGACTGAAATGGAATATGAAGGTGGAGGCTTCGGGTGCGGGAGGAGAAAGCAGGGACATGGTGAGGAGGAAG GTGAAGGAGGTTATGGAAGGCATCAGGAGACAACAGAGGAGTATGGCTCCGGTGGTGGTCATCGGAGTGAAGAGGGCTACGAGAAGCCTTCTATGGTAG
AA sequence Show only first row Show all	>Lus10010622 pacid=23143662 polypeptide=Lus10010622 locus=Lus10010622.g ID=Lus10010622.BGIv1.0 annot-version=v1.0 MRETESEYGAGYGRKQEPESEYGSGYGRKQEPESEYGSGYGHRQESKYGSKEYGRKPAELNTDLVMAVTRTPSMAEGLKWNMKVEASGAGGESRDMVRRK VKEVMEGIRRQQRSMAPVVVIGVKRATRSLLW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010622 [exp]	0	1
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036942 [exp]	29.4	0.8137
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Lus10017609 [exp]	37.1	0.8017
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10033519 [exp]	44.2	0.7475
					Lus10016931 [exp]	71.0	0.7278
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	78.5	0.7701
					Lus10010825 [exp]	85.8	0.7505
AT4G12500			Bifunctional inhibitor/lipid-t...		Lus10032258 [exp]	89.8	0.7153
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10002435 [exp]	97.1	0.7592
					Lus10010382 [exp]	111.0	0.6959
AT2G48140		EDA4	embryo sac development arrest ...		Lus10022067 [exp]	120.1	0.7344

Compare expression of checked genes

Lus10010622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.