Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51150 553 / 0 ATP binding microtubule motor family protein (.1.2) AT5G66310 552 / 0 ATP binding microtubule motor family protein (.1) AT2G21300 540 / 3e-178 ATP binding microtubule motor family protein (.1.2) AT4G24170 539 / 2e-176 ATP binding microtubule motor family protein (.1) AT4G38950 516 / 1e-169 ATP binding microtubule motor family protein (.1.2) AT1G18370 434 / 1e-136 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 414 / 2e-129 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT5G42490 381 / 1e-115 ATP binding microtubule motor family protein (.1) AT3G10180 303 / 1e-86 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 279 / 1e-80 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033920 [exp] 1377 / 0 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10015448 [exp] 884 / 0 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10015449 [exp] 727 / 0 AT5G42490 200 / 2e-56 ATP binding microtubule motor family protein (.1) Lus10025969 [exp] 541 / 9e-176 AT3G51150 694 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10031086 [exp] 534 / 1e-175 AT2G21300 1026 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10035471 [exp] 532 / 7e-175 AT2G21300 1011 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10014268 [exp] 536 / 4e-174 AT5G66310 667 / 0.0 ATP binding microtubule motor family protein (.1) Lus10005181 [exp] 433 / 9e-137 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10032452 [exp] 430 / 3e-135 AT1G18370 1452 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027600 [exp] 927 / 0 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.007G014800 [exp] 563 / 0 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.004G162800 [exp] 555 / 0 AT2G21300 1031 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.005G116900 [exp] 554 / 0 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.009G124500 [exp] 552 / 0 AT2G21300 752 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G136600 [exp] 442 / 6e-140 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.012G054400 [exp] 438 / 3e-138 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 432 / 4e-136 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.006G040700 [exp] 298 / 6e-85 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 285 / 2e-82 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0023 [flax] [poplar] PF11995 [flax] [poplar] DUF3490 Domain of unknown function (DUF3490)
Representative CDS sequence Show only first row Show all	>Lus10010624 pacid=23143643 polypeptide=Lus10010624 locus=Lus10010624.g ID=Lus10010624.BGIv1.0 annot-version=v1.0 ATGAGCATTGTTAGTTCGACAATGAGGGGGAGAGGAGATCGTCGGAGCATGATCGGATCATCATGGGGCGGGGATGAGTCGGTGTTGGGGGACATACAGG GAGTCGGCGGCGAATCTGAGAAGATCCATGTCTCCATTAGGCTCAAACCAGTGATCCACGGCAGAGAAACAACCAAGAATGACGTCTCCGATTGGGAATG CATCAACTCCACCACCATCATCTTCAAGTCATCCATGCCTGATCGCTCCATGCTTCCCTCCGCCTATACATTTGATAGAGTGTTTGGACAAGATTCCAGC ACGAAGCAAGTCTACGAGGAAGCGGCTAAAGAGGTTGCCCTCTCCGTCCTCAGCGGCGTTAATGCAAGCATTTTTGCTTATGGGCAAACAAGCAGCGGGA AAACGTATACAATGAGCGGAATCACAGAGCATGCCATGTCTGATATGTTCCAATACATAAACCAGAACCAAGAAAGAGACTTTGTAATGAAATTTTCTGC CATGGAAATCTATAATGAAGCTGTGAGAGACCTTCTTAGCTCGGATCCTACTCCTCTTAGGCTTCTCGATGATCCGGAGAAAGGAACCGTTGTTGATAAG CTCATTGAAGAGCCTATTGAAGACTGGAACCACCTGCAGCAACTCCTTTCAATTTGTGAAGCTCAAAGGCACATAGGAGAGACGGCTTTGAATGAATTCA GCTCTAGATCCCATCAAATCCTTCGCTTAACAGTAGAAAGTTGTGCTCGTGATAACTTTGGTGCGGAGAATTTGACCACTCTTACAGCTTCATTGAATCT TATCGATTTGGCAGGGAGTGAACGAGCTTCTCAAACATTGTCCACTGGTACAAGGCTAAAAGAAGGTTCCCACATTAACCGAAGCTTGCTTACTCTAGGA ACTGTAGTTCGCAAACTGAGCAAGGGAAAATATGGGCACATACCGTATAGAGAATCCAAGCTGACGAGGATACTACAGAATTGTTTAGGAGGCAATGCCA AGACGGCCATAATTTGCACGATGAGCCCAGCGCGTTGTCATGCCGAGCAATCAAGAAACACACTTGTGTTCGCCAGTTGTGCCAAACAAGTGTCAACAAG CGCACAAGTCAATGTGGTGATGACGGACAAAGCTCTAGTGAAGCAACTCCAAAAGGAGATCTCTAGATTGGAGGGCCAGGTGAAGAGTTTCAGATTGGTG TCTAAAGCCAGTGATGCTGCTGCATTACTGAGAGAAAAAGACCTTCTGATTGAAAAGATGGAGAAAGAGATGAAGGAACTAACCTGGCAACGCGATCTCG CCCAATCACATATTGATAGCTTGCTGAAATCAGTAGGGGAAGATCGATTATTCAGGGTGGAAGAGAATTCAGTACCAGAGACACCAGATGCACTTCTTGC AAGAACCAACACTGAGAGGGAAAATGACCAGTCCAGCATGCCTAGCCCTATCCCCAAGAGGCAAATGCTAGAGACACAAGTCAGTCTGGGAGCCAACTCT ATGCAATTAGATAATAATACTCCTCATCAGTCTCGGTTTAGCACAAGCAATGACTTGGAAGAAGAGATTCCTCAATGGGGCTCTGGTGAGTTAGAGAACA TATGCAGAGATGTTCCCTGTGTCGACAAGAAATCATCTAGGCTGAGCAGAATCCATGAAGATCCAGAAATGGAAGATAGCACAACAATGAAAAGGATTGG TGATGAAGCTGTTGTGTTATCCACCATTGAGGAGACCAAAGAGCTATGCAATGTTGGTTCTTATGACATACATGAGATCCTAAAGCGGAGACTTGAGGAA TTGCAGAAGACATTTGAGACTTTAGACAAGTCGTCTCCTTCTCAAAAAGGGGTGTCATGGACTAGAAGCAAAAGTAAGAAAGCAGTAGTGATGACTATTC CCTCTGCACTTTGGTCCAAAATAGAAGAAGAAGACCAAGAGGATGAAGAAGACAGCGATGAGGAAGCCTATGAGAGTAGACACTCGAGCTCAACTGAAGA GGAGCTTCCTGAAAGACGAGAAAAGTCAGAGAATAAGGCTACTCTTCAATTAGAACATCAAGATTCAAAGTATACAGAGAGCTTTGCCGTGCCGAAAGAG GACGAGATCATCAAAGAGATTGATGTCCACTTTGATGATAAAACCAGTGTCCTAAACTCTGTCGCAGGAGGGAAGAAGACCAAAAAGACCAAACATCAGA AACAACCAACCAGGGAAATTGGCGTCATTTCGTTAGTGGAACCATTAAGGAGAACTCCAGAAGGAAGACCACAACGAGCAAGAGACCTTGCCTCAGAGAC TCACCTTCGTAGTTCAAACCAGAGCCAAGCTAACTGGTCACAGAAATTTGAGAGGTATCGGAAGAAAATCATTGAGCTGTGGGCAAAATGCAACGTACCT TTGGTCCATAGAAGTTACTTCTTCCTGCTCTTCAAAGGTGATCCTTCAGACAACGTCTACTTGGAAGTTGAGCTCAGGAGACTCTACTTCATCAAGGACA CTGCTGCTCGTGGCAATAATCCAACCGTAGAGAGTCAAATCGTCACCTACACCTCAAGTCCAAAGAACCTGAATCGGGAGAGGATAATGTTGGCCAAGCA ATTGCAAAAGAAGTTCACGAGAAGGGAAAGGGAAGAGCTTTACCTCAAGTGGAACATAGACATAGAAACAAAGCAGAGAGGCCTACAACTGGTGGGGAAG TTGTGGACAGACATGAGAGACATGAGACACGTAAAGGAAAGTTCTATCCTCGTCGTGAAGTTGATCGGGTTTGTTGAGCCGCAATACGCACCAAAGGAGC TATTTGGTCTAAGCTTCTTGAATCCGTCGGCTAACCAGAAGTCATTTAGCTGGAGAGACAATGTGTCTTCTCTTCTATAA
AA sequence Show only first row Show all	>Lus10010624 pacid=23143643 polypeptide=Lus10010624 locus=Lus10010624.g ID=Lus10010624.BGIv1.0 annot-version=v1.0 MSIVSSTMRGRGDRRSMIGSSWGGDESVLGDIQGVGGESEKIHVSIRLKPVIHGRETTKNDVSDWECINSTTIIFKSSMPDRSMLPSAYTFDRVFGQDSS TKQVYEEAAKEVALSVLSGVNASIFAYGQTSSGKTYTMSGITEHAMSDMFQYINQNQERDFVMKFSAMEIYNEAVRDLLSSDPTPLRLLDDPEKGTVVDK LIEEPIEDWNHLQQLLSICEAQRHIGETALNEFSSRSHQILRLTVESCARDNFGAENLTTLTASLNLIDLAGSERASQTLSTGTRLKEGSHINRSLLTLG TVVRKLSKGKYGHIPYRESKLTRILQNCLGGNAKTAIICTMSPARCHAEQSRNTLVFASCAKQVSTSAQVNVVMTDKALVKQLQKEISRLEGQVKSFRLV SKASDAAALLREKDLLIEKMEKEMKELTWQRDLAQSHIDSLLKSVGEDRLFRVEENSVPETPDALLARTNTERENDQSSMPSPIPKRQMLETQVSLGANS MQLDNNTPHQSRFSTSNDLEEEIPQWGSGELENICRDVPCVDKKSSRLSRIHEDPEMEDSTTMKRIGDEAVVLSTIEETKELCNVGSYDIHEILKRRLEE LQKTFETLDKSSPSQKGVSWTRSKSKKAVVMTIPSALWSKIEEEDQEDEEDSDEEAYESRHSSSTEEELPERREKSENKATLQLEHQDSKYTESFAVPKE DEIIKEIDVHFDDKTSVLNSVAGGKKTKKTKHQKQPTREIGVISLVEPLRRTPEGRPQRARDLASETHLRSSNQSQANWSQKFERYRKKIIELWAKCNVP LVHRSYFFLLFKGDPSDNVYLEVELRRLYFIKDTAARGNNPTVESQIVTYTSSPKNLNRERIMLAKQLQKKFTRREREELYLKWNIDIETKQRGLQLVGK LWTDMRDMRHVKESSILVVKLIGFVEPQYAPKELFGLSFLNPSANQKSFSWRDNVSSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51150			ATP binding microtubule motor ...		Lus10010624 [exp]	0	1
AT5G42490			ATP binding microtubule motor ...		Lus10015449 [exp]	1.7	0.8267
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10026352 [exp]	3.2	0.7639
AT3G23870			Protein of unknown function (D...		Lus10016636 [exp]	5.5	0.7702
AT3G03550			RING/U-box superfamily protein...		Lus10037264 [exp]	8.0	0.7655
AT5G26990			Drought-responsive family prot...		Lus10017956 [exp]	8.8	0.7685
AT2G27090			Protein of unknown function (D...		Lus10025550 [exp]	12.4	0.7280
AT4G13800			Protein of unknown function (D...		Lus10022549 [exp]	15.9	0.7223
					Lus10002061 [exp]	16.1	0.7611
					Lus10024213 [exp]	20.5	0.7589
AT2G33580			Protein kinase superfamily pro...		Lus10022489 [exp]	24.0	0.6697

Compare expression of checked genes

Lus10010624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.