Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49990 308 / 8e-99 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015447 [exp] 448 / 8e-157 AT3G49990 197 / 8e-60 unknown protein Lus10018154 [exp] 52 / 3e-07 AT1G30590 98 / 1e-22 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234800 [exp] 444 / 4e-151 AT3G49990 299 / 3e-95 unknown protein Potri.002G028100 [exp] 105 / 8e-26 AT3G49990 84 / 6e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010625 pacid=23143634 polypeptide=Lus10010625 locus=Lus10010625.g ID=Lus10010625.BGIv1.0 annot-version=v1.0 ATGGGGAGGAAGAAGAAATTCATCGATAAGAAGAAAGCGGCGACGTTCCAGTTAATGGCGAGGGACTCTTCGGATCCCCTTTTTGACGGGACACCTGGGA GTGAGAAAGTTTTCATTCGTGTCGACGATAATCCTTATGTCCTCGATGCGGAAGGCGGGCATGGCGAAGATGAGTCGAATTCCATATTCGCCGATGCACC TGAGGATGTTGACGATTCAGGAGAGGTTGACGATGCAGTTTTGGGGTTTTCGATGAGATCGCGCGCCGAATTTGGTGGAGCTTCTTATACTAGGTCCGCG TTGCCGGATAATGTGAGGAAAGAGATTATTGAGCTAGGGTTTCCCGATGACGGCTACAATTATCTGCATCACCTTCGTGAGATTAAGAACACTGGTGGAG GCTCCATGTATTATGAGAACCCAAAGGCTCAACTCGATCAGATTCCTGGCGATGTCAAGGCCTATGATGCTTCCCGAGTGCGAGTGCCTGAAGTGAAAGA GGAAGATAAGGATGATCAATCTGTTTACACCATAGCTGCAAAGACTATTGGTGCTAGGATCCAGAAAGTGGTTGATCCTGAAGTGGCTGCTTTACTCGAC TACGACAGTGATATGTCTCGATTCGGTTCTGATGTGGAGGATTTGGAGGAGGACTTTGTGGTTCAGGCTAATCTTGCCGAGGAAGGGGTCGATGGTTTGG ATGATATTGTCACAGGAGTGAGTCTTAAGCCTGAGGAGGTAATTAACGAGCCGAAGGATGAGTGCTTTTCTTCTGGTCATCAAGAGACTGTAGAACAAAT GGGTGCTGATATGATTGATGAGACTAGACCCAGGCGCCTTATAGACGAACAATTTGATGAGCTCGAAGAGAAGTATGGCACAGATAAGGATGATGATGAT GATGATGATGACAGTCATAGAGAAGATGAAGAGGAGTCTCTAGGAGATCGGTTAAAATTGGTTCTTCATAGTAGTGAAATGGATGATGAAATGGAACTTG ATGGAAAATATAGAGCTCCTGCAGATATATTACGCAGTAATAAAGCACCTGAAAGCGAAGAGTTGTTGAACTTTAAAGTTGTCGTTAGCCGCTGTAGAGA GATGGGAAAGAAGTATGAAAATGAGGAGGAAGAAATTGTTTCAGTAGAGGAGAGTAGTGATGATTCGGAGAAGTTTGATTGTGAAAGCATTGTCTCTACA TACTCCAACTTTGAGAACCACCCTGCTAAAATTGAAGCTCCAGGAGCTGCTGCCAGAAGGAAGAAAACGGCTGAAACCTACTCTAAACCGTTGAATACTA CTAGTCATGTCATAGCTCTTCACGGAAAAGAGAAGCTACCTGTAGCCTACTTGCCTGGTTATAATAAAACATCGGTTGAACCACTAACCAATGGCTCTAG CTTGAAAACTAAACCTTTGACAAGGAAGCAACGTGGCCAAGAATCAAAAGAAGAGAAAAAAGAGAGGAAGACTGCTGTAAAGGAGGAACGACATGAAGCT AGACGTCTGAAAAAAGAAACAAAGGTGGTGTATAAACGTGAAGCCAAGCGTGCACAGAGAGTTGCTGCAATATCTGGTCCTTCTTCCCTCAATCTTGGAT AG
AA sequence Show only first row Show all	>Lus10010625 pacid=23143634 polypeptide=Lus10010625 locus=Lus10010625.g ID=Lus10010625.BGIv1.0 annot-version=v1.0 MGRKKKFIDKKKAATFQLMARDSSDPLFDGTPGSEKVFIRVDDNPYVLDAEGGHGEDESNSIFADAPEDVDDSGEVDDAVLGFSMRSRAEFGGASYTRSA LPDNVRKEIIELGFPDDGYNYLHHLREIKNTGGGSMYYENPKAQLDQIPGDVKAYDASRVRVPEVKEEDKDDQSVYTIAAKTIGARIQKVVDPEVAALLD YDSDMSRFGSDVEDLEEDFVVQANLAEEGVDGLDDIVTGVSLKPEEVINEPKDECFSSGHQETVEQMGADMIDETRPRRLIDEQFDELEEKYGTDKDDDD DDDDSHREDEEESLGDRLKLVLHSSEMDDEMELDGKYRAPADILRSNKAPESEELLNFKVVVSRCREMGKKYENEEEEIVSVEESSDDSEKFDCESIVST YSNFENHPAKIEAPGAAARRKKTAETYSKPLNTTSHVIALHGKEKLPVAYLPGYNKTSVEPLTNGSSLKTKPLTRKQRGQESKEEKKERKTAVKEERHEA RRLKKETKVVYKREAKRAQRVAAISGPSSLNLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49990			unknown protein		Lus10010625 [exp]	0	1
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023427 [exp]	6.0	0.8913
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10021096 [exp]	7.3	0.9084
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10006910 [exp]	8.5	0.8621
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	9.5	0.8764
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10002851 [exp]	13.6	0.8989
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	14.0	0.8285
AT5G12220			las1-like family protein (.1.2...		Lus10026818 [exp]	18.0	0.8219
AT1G36280			L-Aspartase-like family protei...		Lus10040229 [exp]	19.4	0.8379
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	19.9	0.8816
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	21.4	0.8754

Compare expression of checked genes

Lus10010625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.