Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32450 1056 / 0 Calcium-binding tetratricopeptide family protein (.1) AT1G05150 1051 / 0 Calcium-binding tetratricopeptide family protein (.1) AT3G04240 72 / 7e-13 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 60 / 4e-09 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G56290 50 / 4e-06 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT4G37460 47 / 5e-05 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G12400 47 / 5e-05 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT3G54010 46 / 9e-05 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033182 [exp] 1280 / 0 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10003576 [exp] 81 / 2e-15 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 75 / 2e-13 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 74 / 3e-13 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021336 [exp] 66 / 1e-10 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 56 / 2e-07 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027124 [exp] 50 / 8e-06 AT5G56290 1003 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Lus10032883 [exp] 49 / 1e-05 AT5G56290 758 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Lus10022603 [exp] 47 / 6e-05 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234900 [exp] 1113 / 0 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.002G027900 [exp] 1112 / 0 AT1G05150 1226 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.019G025600 [exp] 72 / 8e-13 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 68 / 1e-11 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 68 / 2e-11 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 59 / 8e-09 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G170000 [exp] 49 / 1e-05 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.001G473100 [exp] 49 / 1e-05 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.001G119500 [exp] 47 / 6e-05 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.018G100700 [exp] 45 / 7e-05 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10010627 pacid=23143665 polypeptide=Lus10010627 locus=Lus10010627.g ID=Lus10010627.BGIv1.0 annot-version=v1.0 ATGGAGGCGCAGAAGAAGCAGCGGACTGCTGCTTGGGCGGTCTCTCCTAACCACGGTATTGTGTTCGACGATACTTGGAAAATAGTTGATGATTTGGAGA TTTTAATCAAGAGATTGAAAGCGAAGCAGGCCAAAGATGGGAAATTGAAAGGGGACAATAATAACAACGGTGATGCTTACTCGGACGCTGGCTGGTCAAG GGAATTGGGTCCGTCTTCGGAAATGTCCGATAAGAGGATTATCTGGGAAGAATCTGGTCATGATTATGCGGCTTTTGTGAAGGAATTGGGAACTTTGAGG ACTAGAGCTGATGGCGCCAGATCCAGGGAAGAAGCTTTTGATGGGCATATGGCAATTGGGAGGGTTTTGTATGATAACCATCTGTTTAAGGAAGCATTGG TCAGTTTTAAGAGAGCCTGCGAGCTACCGCCTGTGGATGTGAGACCGCATTTTAGAACTGGGAATTGTCTCTATGTTCTAGGCAGATACAGAGAGGCTAA AGAGGAGTTCTTGTTAGCTCTGGAGGCAGCTGAAGCAGGTGGGAATCAATGGACGTATTTGCTACCTCAGATTTATGTTAATCTTGGAATTGCTCTGGAA GGTGAAGGTATGATTCTTAGTGCCTGCGAATATTATAGAGAAGCTGCTATTCTATGCCCGACGCATTATAGAGCTCTGAAGCTTTTAGGCAGTGCTCTTT TTGGGGTAGGAGAGTACAGGGCTGCTGTTAAGACCTTAGAAGAGGCTATTTATTTGAAACCTGACTATGCCGATGCACATTGCGATTTAGCTTCTGCTTT GCATGCAATGGGGGAGGATGAGAAGGCAATCGAGGTATTTCAGAAAGCTATTGACTTAAAACCTGGTCATGTGGATGCTCTGTACAATTTGGGTGGGCTC TACATGGACTTAGGTAGGTTTCAGAGGGCTTCAGAGATGTATACCAGGGTGCTGGCTGTATGGCCAAACCATTGGCGAGCTCAGCTGAATAAGGCTGTCT CGTTATTGGGTGCTGGAGAAACTGAGGAAGCTAAGGGAGCTCTCGAAGAAGCTCTTAAAATGACAAATAGGGTTGAGTTGCATGATGCAATATCTCACAT GAAGCAGCTGCAGAAGAAGAAAGTGAAGCCCAATGGAGAGAGACCCTTTGTCGTTGTTGAACCCTCAAAGTTCAAAACTGTAGGGGAGAAAACTACGCAG AGGCAGGATCTGGCAAATGCCCTTCAAATAAGGAATTTCCAGAGGATCACCAGGCTGAATCGTTGTGATGTGGAACTTTTGAAGAAGGAAATGAGAGATA ATGATGTACCCGTCTCCTATTCAGGTGATGGTGTTCCTGGGAAGTCCATCCGCAAACCCAACTTGGAGGAGATTTTACGGAAGTTGCTTAATTTCCTGAA GCCTGAGATATTCCAGGGAGCTATCAAAGGAATAAACGAGAGAATCTTGTCTGTTCTGGATGAATCAGGTTCAGGAAGGGTTGATCTTGGTATGTTCTTT GCTGTCCTTGCACCCCTTTGCAGTGGTGCCCCCGAGAAGAGAAAACGCGTTGCCTTTGATGCACTTCTATGGCGGCCTGTAAATGAAGGAGGTTCTCAGA TCAAGAGGGTTGATGCTGTTGGGTACATAAAGTTGTTAAGAGCCATATATACACCATCTCCTGGAATAAGCGAAATCCTTGAGGTTCACGGAGAAGCTGA TTCCTCCATGGTATCTTTTAACGAGTTTCTAGTCATGTTTGACGATAGAGATTGGGGATTTGGTATCTTGTCGACTCTATTAAAGCTCGAAAGTGGAGAT AGGAACCGGCATGGTTCGAGGGTGTGCTCAGTTTGTCGATACCCCATAATTGGCGCTCGTTTCAAGGAGATGAAATCGAATTTCAGTCTGTGTAGTCAGT GCTACAGCGAAGGGAAAGTACCGTCCTCGTGGTCAAGGCAGGAGGAATACAAATTTAAAGAGTATGGAAGTGAATCAGAAGCAAGGAAGGATAAATGTAT GTGCTTTCCTCTAAATTCACATGAAGAGTAA
AA sequence Show only first row Show all	>Lus10010627 pacid=23143665 polypeptide=Lus10010627 locus=Lus10010627.g ID=Lus10010627.BGIv1.0 annot-version=v1.0 MEAQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILIKRLKAKQAKDGKLKGDNNNNGDAYSDAGWSRELGPSSEMSDKRIIWEESGHDYAAFVKELGTLR TRADGARSREEAFDGHMAIGRVLYDNHLFKEALVSFKRACELPPVDVRPHFRTGNCLYVLGRYREAKEEFLLALEAAEAGGNQWTYLLPQIYVNLGIALE GEGMILSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKTLEEAIYLKPDYADAHCDLASALHAMGEDEKAIEVFQKAIDLKPGHVDALYNLGGL YMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKGALEEALKMTNRVELHDAISHMKQLQKKKVKPNGERPFVVVEPSKFKTVGEKTTQ RQDLANALQIRNFQRITRLNRCDVELLKKEMRDNDVPVSYSGDGVPGKSIRKPNLEEILRKLLNFLKPEIFQGAIKGINERILSVLDESGSGRVDLGMFF AVLAPLCSGAPEKRKRVAFDALLWRPVNEGGSQIKRVDAVGYIKLLRAIYTPSPGISEILEVHGEADSSMVSFNEFLVMFDDRDWGFGILSTLLKLESGD RNRHGSRVCSVCRYPIIGARFKEMKSNFSLCSQCYSEGKVPSSWSRQEEYKFKEYGSESEARKDKCMCFPLNSHEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32450			Calcium-binding tetratricopept...		Lus10010627 [exp]	0	1
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	1.7	0.9015
AT4G01400			unknown protein		Lus10030195 [exp]	5.7	0.8965
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10034856 [exp]	6.0	0.8435
AT2G32450			Calcium-binding tetratricopept...		Lus10033182 [exp]	7.3	0.8711
AT4G22990			Major Facilitator Superfamily ...		Lus10006340 [exp]	8.1	0.8144
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10024269 [exp]	8.4	0.8300
AT4G01400			unknown protein		Lus10002677 [exp]	14.7	0.8575
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10018762 [exp]	15.0	0.7908
AT5G57460			unknown protein		Lus10028963 [exp]	15.2	0.8607
AT2G32380			Transmembrane protein 97, pred...		Lus10039668 [exp]	15.9	0.8494

Compare expression of checked genes

Lus10010627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.