Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22620 174 / 2e-49 Rhamnogalacturonate lyase family protein (.1.2) AT1G09890 163 / 3e-45 Rhamnogalacturonate lyase family protein (.1) AT4G38030 163 / 4e-45 Rhamnogalacturonate lyase family protein (.1) AT4G37950 162 / 1e-44 Rhamnogalacturonate lyase family protein (.1) AT1G09910 152 / 5e-41 Rhamnogalacturonate lyase family protein (.1) AT1G09880 151 / 6e-41 Rhamnogalacturonate lyase family protein (.1) AT4G24430 146 / 4e-39 Rhamnogalacturonate lyase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029552 [exp] 183 / 4e-53 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10039627 [exp] 179 / 5e-51 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10042916 [exp] 164 / 2e-46 AT1G09890 367 / 2e-120 Rhamnogalacturonate lyase family protein (.1) Lus10028212 [exp] 162 / 9e-45 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10004281 [exp] 161 / 3e-44 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10030233 [exp] 160 / 3e-44 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10012720 [exp] 152 / 5e-41 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10005979 [exp] 150 / 2e-40 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10019231 [exp] 150 / 4e-40 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218500 [exp] 175 / 2e-49 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.002G110300 [exp] 170 / 1e-47 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 164 / 1e-45 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.014G004500 [exp] 164 / 3e-45 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.005G151500 [exp] 154 / 1e-41 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 150 / 1e-40 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 149 / 7e-40 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.011G006200 [exp] 124 / 3e-31 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010628 pacid=23143644 polypeptide=Lus10010628 locus=Lus10010628.g ID=Lus10010628.BGIv1.0 annot-version=v1.0 ATGCCGACGCAAGAGGATAGAAATAAAGGGATACGGTTGGCGTATAAGGAAGCTGTTCTTCTCAACAATGCGTCCAACACGTATCACTACTCCTTGGAGT ATCAGGATAACAAAGTCAACCCGGTTGGGTTTTGGTTAATCTTCCCTGAGTTACGAGTTCCATACAGGTGGACCCACCAAACAAGAACTCACCTCTCACG TTGGTCCCACTCTTCTCAGTGGAAGAATATGGACACAAGGTATAACAGCACCTACGCTTGGAAAATGGCATGGAGCAAGAAGAGAAGAGTTGGCCTTACG ACTTTGTCCACACCGACGACTTCCCTACTCGATGACAACGAGGAACTGTCTCTGGTTAATTCCTCGTCTAGGATCGGAATACAATGTACGGAAGAGGGGT ATTTGGGATTGCCCATGGCAGGGGAGGCAGGTTCCTGGCAAAGAGACGGCAAGCATTACCAGTTCTGGAATACAACAGACAATCATGGCTTTTTCTCCAT TGAAAACGTCAGACCTGGAAATTACGGTTTGTACGGCTTTGTTCCTGGCGTTCTTGGAGATTACAAATTCCATGGAGACATACTCGTCACCCCAGGGTCG CACACGAAGCTGGGTTCTGTAACATATAATCCACCAAGGTCCGGGCCAACCTTGTGGGAAATCGGGGTGGCTGACCGCTCAGCAGCCGAGTTCTTCATCC CAAAACCGGAAACGGTCTACTTCAACAAATTTGATTACACCAAAGATTGGTACTTTGCTCAAGTTACTAGAGAAGTTAAAGATCCTAATGACAGCAATGT CACCCACTACAAAGCAACAAACTGGAGGATCAATTTTCAGCTGGAGAAAGTGGAAGTTGGCCGGACTACAGATTCAGAATGGCATTGGCTTCCGCTACGG ACTCCAAAATCTGGAGAACCTTCAACTATCCGAACGTCGCACGGTATGGGTCCTTTCAACGGCGTCATGTATGATTACCTTCGGTTTGAAGGGCCTCCCA CTTAG
AA sequence Show only first row Show all	>Lus10010628 pacid=23143644 polypeptide=Lus10010628 locus=Lus10010628.g ID=Lus10010628.BGIv1.0 annot-version=v1.0 MPTQEDRNKGIRLAYKEAVLLNNASNTYHYSLEYQDNKVNPVGFWLIFPELRVPYRWTHQTRTHLSRWSHSSQWKNMDTRYNSTYAWKMAWSKKRRVGLT TLSTPTTSLLDDNEELSLVNSSSRIGIQCTEEGYLGLPMAGEAGSWQRDGKHYQFWNTTDNHGFFSIENVRPGNYGLYGFVPGVLGDYKFHGDILVTPGS HTKLGSVTYNPPRSGPTLWEIGVADRSAAEFFIPKPETVYFNKFDYTKDWYFAQVTREVKDPNDSNVTHYKATNWRINFQLEKVEVGRTTDSEWHWLPLR TPKSGEPSTIRTSHGMGPFNGVMYDYLRFEGPPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	0	1
					Lus10002009 [exp]	2.4	1.0000
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	2.8	1.0000
					Lus10002449 [exp]	3.9	1.0000
					Lus10006079 [exp]	4.5	1.0000
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	5.0	1.0000
AT5G19580			glyoxal oxidase-related protei...		Lus10011111 [exp]	5.9	1.0000
					Lus10010414 [exp]	6.0	1.0000
					Lus10033171 [exp]	6.5	1.0000
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	6.9	1.0000
AT1G15780			unknown protein		Lus10023978 [exp]	7.3	1.0000

Compare expression of checked genes

Lus10010628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.