Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54350 229 / 2e-63 FHA EMB1967 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) AT1G75530 191 / 1e-51 FHA Forkhead-associated (FHA) domain-containing protein (.1) AT1G60700 131 / 1e-31 FHA SMAD/FHA domain-containing protein (.1) AT1G75540 112 / 1e-26 CO LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) AT4G39070 76 / 9e-15 CO B-box zinc finger family protein (.1) AT1G06040 61 / 2e-10 CO BBX24, STO SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) AT1G78600 63 / 3e-10 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT2G31380 59 / 4e-09 CO STH salt tolerance homologue (.1) AT4G10240 54 / 3e-08 CO B-box zinc finger family protein (.1) AT4G15250 46 / 9e-05 CO COL11 B-box type zinc finger protein with CCT domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033185 [exp] 1529 / 0 AT3G54350 292 / 4e-87 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10033184 [exp] 345 / 4e-111 AT1G75540 122 / 7e-33 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10028358 [exp] 184 / 5e-48 AT3G54350 211 / 2e-58 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10041808 [exp] 176 / 2e-45 AT3G54350 191 / 1e-51 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10017495 [exp] 91 / 5e-20 AT1G75540 202 / 2e-64 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10028791 [exp] 89 / 2e-19 AT1G75540 206 / 9e-66 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10038147 [exp] 61 / 2e-09 AT1G78600 281 / 2e-94 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10042498 [exp] 61 / 3e-09 AT1G78600 274 / 1e-91 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10027041 [exp] 59 / 6e-09 AT1G06040 298 / 1e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G028300 [exp] 659 / 0 AT3G54350 333 / 2e-102 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.005G234300 [exp] 652 / 0 AT3G54350 306 / 3e-92 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.007G016900 [exp] 212 / 4e-57 AT3G54350 206 / 1e-56 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.005G117900 [exp] 211 / 1e-56 AT3G54350 208 / 5e-57 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.005G234500 [exp] 163 / 2e-44 AT1G75540 185 / 2e-56 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.002G028200 [exp] 156 / 5e-42 AT1G75540 252 / 2e-82 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.004G161000 [exp] 93 / 4e-21 AT4G39070 192 / 6e-62 B-box zinc finger family protein (.1) Potri.009G122000 [exp] 88 / 3e-19 AT4G39070 202 / 1e-65 B-box zinc finger family protein (.1) Potri.001G384000 [exp] 62 / 4e-10 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.011G105400 [exp] 60 / 3e-09 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10010629 pacid=23143645 polypeptide=Lus10010629 locus=Lus10010629.g ID=Lus10010629.BGIv1.0 annot-version=v1.0 ATGGGAGCTCTGGCTCCCGTGACTCCATGGGATCCAGAGGATGATCTTCTCTTGAAGAATGCTGTTGAGTTTTCTACATGTTGCGAATTGTCCTCAAGGG ATCTAATTGCTTTACAGGCAGGTGCTTCCTTGGAGTCGCTTGCTAAAGGTGCAGTGCAGTTCTCTAGAAAATTCTCAATTAGGGAACTTGAAGAGCGTTG GCATTCTCTCCTGTATGATCCCGTTCTGTCGAAAGAAGCTGCTTTGAGGATGATTGAGCTTGAGCATCCCTCAGCTACTATAACGTCAAGGGTTACCAGA TGTGGAAATTTAAAAGATAGCAAATCTCTTTCTGGGAAAAGGAAAGCTGAAAGTGTTCGTTCTTGCTACTATGCTTTGCGTAAAAGAATCCGTAATGAGC CATTTGACTCTATGGATTTGAGTTTTCTTATGGGACCCATCGATAACAATTATGGAGGTGAAGATGGCCCTTTACCTGGACCTTGCATGCTTGATGATCC CATTCCTGATCATTTTGGATTTCAGGAAGCTAATATGGATATGATGCTGACAGAAATTGGAGTTTGTAATGGTGATCCTGTATTTAATTCAGAATTTCAG AATACAGTTCAAAGAGATTTTCCAATACAGCATGATGATTTACCAAATGACATGGACAGTGTAATGGCCACTGGCAATGTGACGGTAGTTGAGGAATTTC GCCAACCAGATAGGCTACCTTTGCACAGTAACCAGATACAAGGATGCTCGAATTTTGATGAAGATCAGGGTTTTGGTTCACAGACTCTTCAGTGTGGGAC GCAATTTCACAATCTTGAGTACCCATCTCCGCTTCCTGAATTCCCGCCATGGAAATCTGGCACAGGTATGACAATGGCAACCGAGTCTGTTGATATTGGT CTAAGGGGCAAAGAGCTACGTGCTAGAGATGGATTTTCTCTTCCGAGTGATACTGCTAGTAAAGAGTCTGATCCATCAGAATATGGTATGGTTCATGCTG ACTCAGATATACAAAATGAGGAGCTAAAAGATTCCAGTGCTGGTAGAGATGGTTTTCTGGCTGAACTTTCAAACTCTCTATTTGACTTTACAAATGAAGA TGAACATCTGTTTATGCATGTTGATGGAAAAGATGCCATTGATAAGTCACACAAGATCTATGAGGGCCTTAGTTCCTTGCTGTTGAGTTCACCAAATGAG GTCAATCAAGATGGTTTGTCTGGTGTAATTGAGCTGGATATGTCTGCGACTGTGGATCATCATGAAACTCAGTCGAGTGCAAGTGCCCAAGTGTTAGATG AAGATACCAGCTTGCACCAAATACGAGATGCTCTCTGCATGGCTGATAATCAGAGCATCGATGCCCCATCAACTTCAAAGCCTGAGTTTCCAGAACTTAC TTGCGACGTTATTTGTGTGTTAAACACAGAAGATCCTGAGGTCCCGTGTAATGATCATGTTGTTTTTACCCCCAGATTGCGTCGTAGAGCAGTTGCATCT GTACCTCGTCGATCTCAACATCCCAAGAAACTCAATTCCTCCATGAAAGAAATGCCCAACAACCAAAGAAGTAGCAAAGGGAGCAAGCCATTGAAGACGC CCGGGGATCTAGGAAACTCTCGACAATCACAGACGTCCTCTCAGATTATTAGGCCACAAGTGAGTCCAGAAGTTAGTCAACCTCATTCGGTTAGTGATCA TGGAGTTATAATTGAGTTACCGAAAAGTGATTCCTCTAGAAAGGGCACAGTTGTTGCTCATGGTAGTTATTGCACAAATAATGGAACGACTAGTCAGATG CCTGTTAAGCTGAAGGAAGAAACTACATCGATCGAGATAGCAAAGCCTGCTAGCCATATAACATTAATGGAAAAGCAGCCTCCTGTTTCTAATGGCTATA AATGTTTTAAAGAGACCAGTTCAAATGGTGTTAAGCAAGAAATAGATGCTCTGTCAGGGTTTCCAAATCATCAAGGGTCTATTGCAGCAGTTGAGCCTGT AGATATTTCAACCACCGAACAAAGAATAAAGAATACGTCTGACCCAGAAGACCTAGTGGTAGAAAGTGATGATGATGTCCCTTATTTTTCAGACATTGAA GCTATGATACTGGATATGGACTTGGATCCCGAAGACCATGACCTATTTTCAAATGAGCAAGTGTTAAGATACCAGCAAGAAGAAACTAAAAGAGCAATCA AGAGGCTGGAACAGAGTGCGCATGCATGCATGCAAAGAGCCATCCAGTCACATGGAGCTTTTGCTATTTTATATGGTCGGCATTCAAAACATTACATAAA GAAGTCCGAGGTTTTACTTGGTAGAGCTACAGACGATGTCATGGTGGACATTGACTTGAGTAGAGAAGGGTGTGCGAATAAGATATCGCGGCGACAGGCA ATTATAACTTTGGAGAAGAAGGGATGTTTCAATGTGAAGAATGTCGGCAAATTTTCCATCTCAGTCAATGACAAGGAAATTACCAATGGACAGAGCCTAA TTCTTACTTCCGGTTGCTTACTGGAGATAAGAGGGAAGCAGTTCATATTCGAGATAAACCCAAGCTGTGAAAAACGGGCGTTTGTGTTCTGCCAACAGGA CAGAGCAATCCTCTGCCAAGATTGCGATGTCTCAATCCACACCACAAACGAGTTTACCCGGCAGCACACCAGGTTTCTTCTCACCGGAGTTAAGCTCTCC CATGATTCCTCCGGCGGCGGAAATCCACCATCGTCTGTGAAAAGGAGGATGTCGCCATCGGATTGCAACCGTCAGGATGTTGCTACCCCGAATCTGTTTC GGCAAAGCATATCTTCTTCGAACAACCCAGCAACTAACATGTTGATGACAGGGGAAGGATTTGGTTCTTTAGTTCCGAGCACTATGTCTGATTACTTGAT AGAGATGCTCCCTGGCTGGAAGGTTGACAACTTTCTTGACACATCATCAGACCCTTATGGTTTCTCAAAGCCAACCGTTGCTCATGGAGGGTTGACTGTC ATGGCTAATGGAGGAATTAGTTGCGATCTGATGAGCTCAATGTCATCTGAAAGCTCAGGAATTTGGGTTCCACGGAACCATCATCATCATCATCCAGAAA TGAGCACACAAAATGAGTTGAAGGAGACAAAGGATCATCAAGTAGGGAATGCCAAGCCCAGCAACAGTAGGGTATGGACTATGAATGATGCGTTTACTGT CCCACAGATAAGTCCACCGTCCATTGGCTCCAAGAGATCTAGACTCTTGTGGCAGTAG
AA sequence Show only first row Show all	>Lus10010629 pacid=23143645 polypeptide=Lus10010629 locus=Lus10010629.g ID=Lus10010629.BGIv1.0 annot-version=v1.0 MGALAPVTPWDPEDDLLLKNAVEFSTCCELSSRDLIALQAGASLESLAKGAVQFSRKFSIRELEERWHSLLYDPVLSKEAALRMIELEHPSATITSRVTR CGNLKDSKSLSGKRKAESVRSCYYALRKRIRNEPFDSMDLSFLMGPIDNNYGGEDGPLPGPCMLDDPIPDHFGFQEANMDMMLTEIGVCNGDPVFNSEFQ NTVQRDFPIQHDDLPNDMDSVMATGNVTVVEEFRQPDRLPLHSNQIQGCSNFDEDQGFGSQTLQCGTQFHNLEYPSPLPEFPPWKSGTGMTMATESVDIG LRGKELRARDGFSLPSDTASKESDPSEYGMVHADSDIQNEELKDSSAGRDGFLAELSNSLFDFTNEDEHLFMHVDGKDAIDKSHKIYEGLSSLLLSSPNE VNQDGLSGVIELDMSATVDHHETQSSASAQVLDEDTSLHQIRDALCMADNQSIDAPSTSKPEFPELTCDVICVLNTEDPEVPCNDHVVFTPRLRRRAVAS VPRRSQHPKKLNSSMKEMPNNQRSSKGSKPLKTPGDLGNSRQSQTSSQIIRPQVSPEVSQPHSVSDHGVIIELPKSDSSRKGTVVAHGSYCTNNGTTSQM PVKLKEETTSIEIAKPASHITLMEKQPPVSNGYKCFKETSSNGVKQEIDALSGFPNHQGSIAAVEPVDISTTEQRIKNTSDPEDLVVESDDDVPYFSDIE AMILDMDLDPEDHDLFSNEQVLRYQQEETKRAIKRLEQSAHACMQRAIQSHGAFAILYGRHSKHYIKKSEVLLGRATDDVMVDIDLSREGCANKISRRQA IITLEKKGCFNVKNVGKFSISVNDKEITNGQSLILTSGCLLEIRGKQFIFEINPSCEKRAFVFCQQDRAILCQDCDVSIHTTNEFTRQHTRFLLTGVKLS HDSSGGGNPPSSVKRRMSPSDCNRQDVATPNLFRQSISSSNNPATNMLMTGEGFGSLVPSTMSDYLIEMLPGWKVDNFLDTSSDPYGFSKPTVAHGGLTV MANGGISCDLMSSMSSESSGIWVPRNHHHHHPEMSTQNELKETKDHQVGNAKPSNSRVWTMNDAFTVPQISPPSIGSKRSRLLWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10010629 [exp]	0	1
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Lus10034986 [exp]	12.5	0.7998
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10041720 [exp]	13.9	0.8071
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10002206 [exp]	15.5	0.7554
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10017342 [exp]	15.9	0.7794
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10020464 [exp]	22.6	0.8024
AT2G37840			Protein kinase superfamily pro...		Lus10021493 [exp]	41.3	0.7824
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	42.5	0.7753
AT4G10730			Protein kinase superfamily pro...		Lus10017326 [exp]	56.0	0.7694
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042260 [exp]	58.0	0.7662
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	66.1	0.7645

Compare expression of checked genes

Lus10010629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.