Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75410 323 / 7e-104 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT1G19700 306 / 5e-97 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G16400 292 / 2e-92 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G34610 279 / 1e-86 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G35940 227 / 8e-66 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT2G23760 222 / 2e-64 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT4G36870 219 / 1e-62 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G27220 207 / 1e-60 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT1G75430 197 / 2e-58 HD BLH11 BEL1-like homeodomain 11 (.1) AT5G41410 204 / 1e-57 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033192 [exp] 1041 / 0 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2) Lus10017481 [exp] 292 / 3e-90 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10000184 [exp] 291 / 6e-90 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 291 / 8e-90 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10004201 [exp] 253 / 2e-75 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 252 / 5e-75 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10013579 [exp] 241 / 3e-72 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10016790 [exp] 199 / 3e-57 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022485 [exp] 199 / 3e-55 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G031000 [exp] 327 / 2e-103 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.004G159300 [exp] 303 / 2e-94 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 299 / 7e-93 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.006G203000 [exp] 272 / 1e-82 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 270 / 7e-82 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 265 / 2e-79 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 259 / 2e-77 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.005G232000 [exp] 228 / 2e-68 AT1G75430 308 / 8e-103 BEL1-like homeodomain 11 (.1) Potri.003G131300 [exp] 231 / 2e-67 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.002G030900 [exp] 224 / 8e-67 AT1G75430 289 / 1e-95 BEL1-like homeodomain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10010633 pacid=23143636 polypeptide=Lus10010633 locus=Lus10010633.g ID=Lus10010633.BGIv1.0 annot-version=v1.0 ATGGCTACTTACTATTCAAGTATAGACAACTTGCACACATCTACTTCTTCTTGTGAAACCAATCAGCTGATTTCTTCTTCTAATTCTGCTTCAATCCATC ATGATCAACAACTACTCCCTCATTACCACTCTGACCAATTCGGATCCAGAAACGAGATGGTGATGTTCATCCCTCCTATCAACGACCACGACAATGCACC AGATCATGTCGTCGATATTCCAAACCTCATCCAAAATTCGGACAACTTCAACATCCAAGGAGGACTGTCTCTAAGCCTAGGGACACAGATGATGGAGACA TCATCATCATCAGCAGCAGTGATAGTTTCTGTGCCTCCTCCTTCTTCTTCATACAACAACAATTATCATCAGTACCCAGTGGAGGCAGAAGATCAGGATC AGCAGCTTATTCACATTAAGATGGAGGGTCATCGTCCTATTCCTCCTCCCCAGTTTTATCAGACGACGTCGACTATGGGGTATGCTAATGTTTCAGTGTT GAATTCTAACTACCTCAAGGTTACACATGAATTGCTCGATGAAGTTGTCAATGTCAAGTATGCACTCACACATCAAGTAACCGCCGATGATAAATGTTCT GACAAAGAGGGAAATAACGATGATGCTGCTGAGTCGGGTGTCGATTCGTCTGCTTCGGAGTTGTCACCATCTGAGAAGCAGGATTTGCAGGCCAAGAAGT CCAAGCTTATGTCCATGATCGATGAGGTGGACAAGAGATACAAGCAATATTACCACCAAATGCAAGTTTTGATTTCATCAATGGACACGGTGGTGGCCGG GAATGGAGCTGCTAAGGCATACACTTCGCTAGCATTGCAGACAATTTCACGTCGTTTCCGCTGCCTTCGCGATGCAATCGAAAACCAGATAGAGGTGATT AGGAAGAAGTTGGGTGAGCAACAAGAAGCTCTGGGGCAAGGAGGTATTCCTCGACTTCGCTACATTGAACAACAGCTAAAGCTAGAAAGAAGTACACTTC ACCAACATTTGGGGGTTATGCGCCACTCTTGGCGGCCACAAAGAGGCCTCCCTGAAAACTCTGTCTCTCTTCTAAGAGCTTGGCTCTTCGAACACTTCCT CAATCCGTATCCAAATGAATCAGAGAAGAACATGCTAGCAAAACAAACAGGGTTGTCGAAAAATCAGGTAGCAAATTGGTTTATAAATGCAAGGGTGAGG CTATGGAAGCCAATGGTGGAGGAGATGTACAAAGAAGAGTGTGGCGGTGGGGAGTCAGATGGCAACTCCAACAAATCATCAAACTATAATAATGAGGCCA AGAGAGGTCGTCATCATAATCAACTTCACGATCCAAATTATGATTTGGATGCCAACAACAGTCTACTAGTAGTAGCAGACCATGAACTACAAGACACAGC TGCAGTGCCAGCTGATCAACTCATCCATTACTTCCACTTGGACCAGATCAACGGCCACGGACAGCTGCATCAGTACGTGGAAGACCAGACACAGAATAGT AGTATGCCGCCACTGAACCTGAATACAGCAGTAGGAGATGGGAGCCTAATGTCTGCTGCTGTTCAATACGGTGGCGTTTCAGCGTCTACAGGATTAATAA TCCCTCACGTCTCCCTTGCACTGGGATTGCAGCACAATGAAACTGATGATGGGGGCTTGGTCGATGATGATTCGTTCCACCACAGCAGGTTTGGGAACAC AGTACATTCGTTCCATGATTTTGTTGTGTCCAAGAATCCTTGCTTCTAG
AA sequence Show only first row Show all	>Lus10010633 pacid=23143636 polypeptide=Lus10010633 locus=Lus10010633.g ID=Lus10010633.BGIv1.0 annot-version=v1.0 MATYYSSIDNLHTSTSSCETNQLISSSNSASIHHDQQLLPHYHSDQFGSRNEMVMFIPPINDHDNAPDHVVDIPNLIQNSDNFNIQGGLSLSLGTQMMET SSSSAAVIVSVPPPSSSYNNNYHQYPVEAEDQDQQLIHIKMEGHRPIPPPQFYQTTSTMGYANVSVLNSNYLKVTHELLDEVVNVKYALTHQVTADDKCS DKEGNNDDAAESGVDSSASELSPSEKQDLQAKKSKLMSMIDEVDKRYKQYYHQMQVLISSMDTVVAGNGAAKAYTSLALQTISRRFRCLRDAIENQIEVI RKKLGEQQEALGQGGIPRLRYIEQQLKLERSTLHQHLGVMRHSWRPQRGLPENSVSLLRAWLFEHFLNPYPNESEKNMLAKQTGLSKNQVANWFINARVR LWKPMVEEMYKEECGGGESDGNSNKSSNYNNEAKRGRHHNQLHDPNYDLDANNSLLVVADHELQDTAAVPADQLIHYFHLDQINGHGQLHQYVEDQTQNS SMPPLNLNTAVGDGSLMSAAVQYGGVSASTGLIIPHVSLALGLQHNETDDGGLVDDDSFHHSRFGNTVHSFHDFVVSKNPCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	0	1
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	1.0	0.9599
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10041366 [exp]	2.4	0.9089
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	2.4	0.9057
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021202 [exp]	4.2	0.8637
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032750 [exp]	4.2	0.8376
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	5.3	0.8777
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	7.5	0.8602
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10005972 [exp]	7.5	0.8347
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	8.2	0.8386
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10042247 [exp]	8.7	0.8770

Compare expression of checked genes

Lus10010633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.