Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44970 442 / 1e-156 Peroxidase superfamily protein (.1) AT4G36430 393 / 3e-137 Peroxidase superfamily protein (.1) AT5G66390 380 / 3e-132 Peroxidase superfamily protein (.1) AT2G18150 378 / 3e-131 Peroxidase superfamily protein (.1) AT2G18140 365 / 3e-126 Peroxidase superfamily protein (.1) AT3G50990 350 / 4e-120 Peroxidase superfamily protein (.1) AT2G35380 323 / 1e-109 Peroxidase superfamily protein (.1.2) AT2G38390 307 / 3e-103 Peroxidase superfamily protein (.1) AT5G06720 306 / 5e-103 ATPA2 peroxidase 2 (.1) AT4G16270 304 / 6e-102 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041784 [exp] 412 / 1e-144 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10034207 [exp] 319 / 4e-108 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10032786 [exp] 304 / 2e-102 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10029094 [exp] 303 / 8e-102 AT1G68850 439 / 1e-155 Peroxidase superfamily protein (.1) Lus10028337 [exp] 312 / 9e-102 AT2G18150 354 / 7e-118 Peroxidase superfamily protein (.1) Lus10013065 [exp] 300 / 1e-100 AT1G68850 431 / 2e-152 Peroxidase superfamily protein (.1) Lus10003573 [exp] 299 / 1e-100 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10025255 [exp] 298 / 5e-100 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10006534 [exp] 296 / 2e-99 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G031200 [exp] 455 / 2e-161 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 403 / 2e-141 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 400 / 4e-140 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.001G145800 [exp] 336 / 1e-114 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2) Potri.016G132800 [exp] 322 / 1e-109 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.008G103200 [exp] 320 / 2e-108 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 317 / 1e-107 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 317 / 2e-107 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 315 / 1e-106 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 314 / 3e-106 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10010634 pacid=23143632 polypeptide=Lus10010634 locus=Lus10010634.g ID=Lus10010634.BGIv1.0 annot-version=v1.0 ATGGCGCCATTCTGCAAAATTGTTTTCAGTTTCTCAGCACTAGCAGTTGTAGTACTTGTGTTTTCCTTGTCATTTGCTGGATCCCTAGCTCACCCTCCCG ATCACACCCCTCACACAGGCACCCGCCGATCCTCCTCAGGTCTTAATCCCGAGTACTATACGTTTTCATGCCCTCAGGCTAACCACATTGTGGTATCGGT CCTCGGAAACGTCATCGCTAGAGATCCTAGGATGGCTGCTTCCTTGCTTAGGCTCCATTTCCATGATTGCTTTGTGCAGGGGTGTGATGCGTCAGTTCTG CTGGACAGTAGCGACGAAGTTGCTAGTGAGAAGAATGCAGGTCCAAACAGGAATTCTTTGAGAGGGTTTGAAGTGATCGACCAGATCAAAGCAGAGTTGG AAAGAGCTTGCCCTCAAACGGTCTCTTGTGCGGACATTCTCGCCATGGCAGCACGTGGATCTACACTACTCAGTGGAGGACCGAGTTGGGAGCTACCTTT GGGAAGAAAGGACTCAAGAACAGCAAGCATAAGCTTGTCCAACCAGAACATTCCGCCTCCAAACTCCACCATCCAGACCCTCGTTAACCTTTTCAAACGC CAAGGCCTTAACAAGATCGACCTCGTCGCACTCTCCGGAGGGCACACGATAGGCGTGGCGAGATGCACGACGTTCAAGCAGAGACTGTACAGCCAAAAGG GTCCGGACCTGAGTTTGGAGAGGACTTACTCCATGGGGTTGAAGTCGGTCTGTCCGAGATCGGGCGGTGACAACAACATTAGCCCTCTCGATTTCGGTTC CCCTGCCAGATTCGACAACACCTACTTCAACCTCATCCTGTCGGGCAAAGGCCTCCTCACTTCGGACCAAGTTCTGTTCACTGGTGGTGATACGTTTCAG TTGGTGAAGAGATATGCTGAGGACCAACAGCTTTTCTTTGCTCAGTTCGCCAAGTCCATGGTCAGGATGGGGAGGGTTGGTGTTCTCACTGGCTTCAAGG GTGAGGTTCGTAAGAATTGCCGCCGTGTCAACTAA
AA sequence Show only first row Show all	>Lus10010634 pacid=23143632 polypeptide=Lus10010634 locus=Lus10010634.g ID=Lus10010634.BGIv1.0 annot-version=v1.0 MAPFCKIVFSFSALAVVVLVFSLSFAGSLAHPPDHTPHTGTRRSSSGLNPEYYTFSCPQANHIVVSVLGNVIARDPRMAASLLRLHFHDCFVQGCDASVL LDSSDEVASEKNAGPNRNSLRGFEVIDQIKAELERACPQTVSCADILAMAARGSTLLSGGPSWELPLGRKDSRTASISLSNQNIPPPNSTIQTLVNLFKR QGLNKIDLVALSGGHTIGVARCTTFKQRLYSQKGPDLSLERTYSMGLKSVCPRSGGDNNISPLDFGSPARFDNTYFNLILSGKGLLTSDQVLFTGGDTFQ LVKRYAEDQQLFFAQFAKSMVRMGRVGVLTGFKGEVRKNCRRVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	0	1
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	1.0	0.9616
AT1G13590		ATPSK1	phytosulfokine 1 precursor (.1...		Lus10030572 [exp]	3.2	0.9049
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10031059 [exp]	3.7	0.9079
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10006827 [exp]	4.0	0.9070
AT5G49960			unknown protein		Lus10035805 [exp]	4.2	0.9310
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	4.6	0.9276
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10002704 [exp]	6.7	0.8765
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	9.2	0.9241
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	12.2	0.9155
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10032746 [exp]	14.3	0.8983

Compare expression of checked genes

Lus10010634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.