Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35180 245 / 3e-82 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G45010 221 / 9e-73 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G35170 218 / 1e-71 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033194 [exp] 380 / 3e-135 AT1G35180 270 / 2e-91 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G231600 [exp] 283 / 2e-97 AT1G35180 307 / 9e-107 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10010635 pacid=23143641 polypeptide=Lus10010635 locus=Lus10010635.g ID=Lus10010635.BGIv1.0 annot-version=v1.0 ATGGAGAATCAAATGTTGAACATAGTCGTCGGAGGGGTCCTTTGCTGGACGACAGCATTCCTCGTAGCAAAGAACACCTTCCCAAAGCGGTCTTTAGAGT TCTGCAACCGTTTGGTCTCAACAAGCCACGCGGCTCTTGCTGTGTCTTTAGCTACCCTCAGTGTTGAAGATTGGACTCGCCCTGTTTCCCCTCTCGCTTC TAATTCTTCCCCATATCAGGCAAGTCAAATGAGCCTTTCGTACATGATATACGATCTGGGTTGTTGCTTGTTCGAGAGAAGAGTTGATATGGCGAATGCA ATTCACCATTTGGTCAGCATTGTTGGAATTGGAGCTGGTCTCGCTTATCATAAGTGTGGAACTGAGATGGTTACTGCTCTGTGGGTGACTGAGATCTCTA GTCCTTTGCTTCACTTGAGGGAGATTCTGAAGGAGCTTGGTTACAGAGACACACAGCTCAACTTCGCCGCTGATATTGCATTTGCTGTGATATTCTCGTT TGCAAGAATGGGGTTTGGGCCATATCTTACTTACGTGACTCTATCTGCCAATAATCCACTCATCATTAAGGCAATGGCATTGGGGTTACAACTGGTGAGT GCTTTCTGGTTCTACAAAATTGTTAGGATGGTGAGGTACAAGGTTGCGAAATGGTCTTCTTCAAGCACCACCAGAAAGGCAACTTAA
AA sequence Show only first row Show all	>Lus10010635 pacid=23143641 polypeptide=Lus10010635 locus=Lus10010635.g ID=Lus10010635.BGIv1.0 annot-version=v1.0 MENQMLNIVVGGVLCWTTAFLVAKNTFPKRSLEFCNRLVSTSHAALAVSLATLSVEDWTRPVSPLASNSSPYQASQMSLSYMIYDLGCCLFERRVDMANA IHHLVSIVGIGAGLAYHKCGTEMVTALWVTEISSPLLHLREILKELGYRDTQLNFAADIAFAVIFSFARMGFGPYLTYVTLSANNPLIIKAMALGLQLVS AFWFYKIVRMVRYKVAKWSSSSTTRKAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10010635 [exp]	0	1
AT2G32580			Protein of unknown function (D...		Lus10035349 [exp]	1.0	0.8935
AT4G20760			NAD(P)-binding Rossmann-fold s...		Lus10036204 [exp]	2.0	0.8406
AT3G61080			Protein kinase superfamily pro...		Lus10036555 [exp]	4.7	0.8714
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024649 [exp]	6.3	0.8238
AT5G08400			Protein of unknown function (D...		Lus10009625 [exp]	12.2	0.8170
AT5G57910			unknown protein		Lus10022161 [exp]	12.4	0.8181
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10016930 [exp]	18.9	0.8525
AT1G65295			unknown protein		Lus10020197 [exp]	24.1	0.7870
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10002414 [exp]	25.5	0.8388
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10026274 [exp]	33.1	0.7683

Compare expression of checked genes

Lus10010635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.