Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04940 338 / 9e-118 AtTic20-I, atTIC20, TIC20 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) AT1G04945 298 / 1e-97 HIT-type Zinc finger family protein (.1.2.3) AT4G03320 161 / 3e-48 AtTic20-IV, TIC20-IV translocon at the inner envelope membrane of chloroplasts 20-IV (.1) AT2G47840 51 / 1e-07 AtTic20-II translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033195 [exp] 516 / 0 AT1G04940 341 / 7e-119 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Lus10039783 [exp] 156 / 2e-46 AT4G03320 263 / 1e-87 translocon at the inner envelope membrane of chloroplasts 20-IV (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G031800 [exp] 360 / 1e-126 AT1G04940 363 / 1e-127 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Potri.005G231400 [exp] 359 / 3e-126 AT1G04940 360 / 2e-126 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Potri.019G108800 [exp] 171 / 1e-51 AT4G03320 283 / 2e-95 translocon at the inner envelope membrane of chloroplasts 20-IV (.1) Potri.013G084900 [exp] 42 / 0.0001 AT2G47840 196 / 2e-63 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09685 [flax] [poplar] DUF4870 Domain of unknown function (DUF4870)
Representative CDS sequence Show only first row Show all	>Lus10010636 pacid=23143650 polypeptide=Lus10010636 locus=Lus10010636.g ID=Lus10010636.BGIv1.0 annot-version=v1.0 ATGATTATACACGGATGCACGTTACCTTCCGGGTATGGAATTATGAATTCCAGGGCAACTCAATTCCCTCATGGTAGATTGGTTTCTGCTCGCATTCCTT CCAGCGTATCACCATTAACCATTAGGAGTTCTTTGCTGAAGCCCAAATCTTGTTTCTCAATACCGTCATGTGGGTCTTTCCATAACCTCTCTGCTGTATC TGTACAAGGTGGATTACTACACATGATTCCATATCTACCAAGAAAGCGTGGATCTTATCTCCCTGCTCGGGCTTCCAAGGATGTCCCTTACAGTTTTCGG TTCCCTCCAATGACAAAAAAGCCAAGGTGGTGGTGGAGGACGCTAGCATGCCTCCCTTATTTGATGCCTTTCCATGAAACCTGGATGTATGCTCAGACAG CATATAACTTGCACCCCTTCATTGAACAGTTTGAGTATCTTACATACCCGTTCCTCAGAGCTATTGGTAGCTTGCCAGGCTGGTTCTTGATGGCCTATTT CTTCTGCGCCTATCTTGGAGTTGTCAGGAGAAAGGAATGGCCACATTTCTTCAGATTTCATGTGGTGACAGGAATGTTGCTCGAGATTGCCCTGCAGGTG GTTGGAACGGTGAGCCGTTGGATGCCACAAGGTTTATACTGGGGGAAGCTTGGGATGCACTTTTGGACGGCCCTGGCATTTGCTCACCTTTTCACTGTCC TCGAATGCATAAGGTGTGCTATCTGTGGTATGTACGCTGATGTCCCTTTTGTCTCTGATGCTGCATACATTCAGATTCCATATGACTAA
AA sequence Show only first row Show all	>Lus10010636 pacid=23143650 polypeptide=Lus10010636 locus=Lus10010636.g ID=Lus10010636.BGIv1.0 annot-version=v1.0 MIIHGCTLPSGYGIMNSRATQFPHGRLVSARIPSSVSPLTIRSSLLKPKSCFSIPSCGSFHNLSAVSVQGGLLHMIPYLPRKRGSYLPARASKDVPYSFR FPPMTKKPRWWWRTLACLPYLMPFHETWMYAQTAYNLHPFIEQFEYLTYPFLRAIGSLPGWFLMAYFFCAYLGVVRRKEWPHFFRFHVVTGMLLEIALQV VGTVSRWMPQGLYWGKLGMHFWTALAFAHLFTVLECIRCAICGMYADVPFVSDAAYIQIPYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10010636 [exp]	0	1
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10033195 [exp]	3.5	0.9269
AT1G16790			ribosomal protein-related (.1)		Lus10033346 [exp]	3.9	0.9296
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	4.5	0.9441
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	11.2	0.9346
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10022110 [exp]	13.6	0.9315
AT3G08920			Rhodanese/Cell cycle control p...		Lus10002485 [exp]	17.0	0.9305
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10033475 [exp]	20.7	0.9010
AT3G21300			RNA methyltransferase family p...		Lus10000172 [exp]	23.7	0.8822
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	24.7	0.9230
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10032165 [exp]	24.7	0.9014

Compare expression of checked genes

Lus10010636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.