Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27660 172 / 8e-49 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 112 / 5e-28 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 110 / 2e-26 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 108 / 4e-26 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G61660 108 / 5e-26 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G29100 108 / 1e-25 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31730 102 / 1e-25 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G21340 105 / 2e-25 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G31050 106 / 6e-25 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G05170 101 / 1e-24 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033198 [exp] 492 / 3e-174 AT1G27660 131 / 2e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014279 [exp] 133 / 2e-33 AT5G44230 374 / 5e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013874 [exp] 123 / 2e-31 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038550 [exp] 125 / 3e-31 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 120 / 1e-30 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 119 / 3e-30 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10023669 [exp] 115 / 2e-28 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10025987 [exp] 114 / 3e-28 AT1G27660 119 / 6e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 100 / 6e-25 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G230800 [exp] 184 / 1e-53 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G032400 [exp] 181 / 4e-52 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G020200 [exp] 147 / 5e-40 AT1G27660 155 / 8e-43 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G119601 [exp] 138 / 1e-36 AT1G27660 145 / 2e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 125 / 1e-32 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 124 / 4e-32 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G083700 [exp] 122 / 5e-31 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 122 / 3e-30 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 119 / 4e-29 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.009G094300 [exp] 113 / 2e-28 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010638 pacid=23143646 polypeptide=Lus10010638 locus=Lus10010638.g ID=Lus10010638.BGIv1.0 annot-version=v1.0 ATGGATGAATCCTCTGGGAATCATCAGCTCCGGCATCATCAGCTGCAAGTTGTTGGTGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTCAGC CGAGCTCTTCGGCCGCCCCCCGTAGTAATAATTTGTATGGAGGAGCAACCGGCGGCGACCATGGCTGGACCCAGAACTTTACTTTCTGCAACCCACTTAA TAACCATTACCCTAGTGATGGAGGTTTGGTAAACCCAGCAAGGAACCACCACCAAGATCACTTGAGCTTCCAATGGAACACCAACTCCCACCGCTTCACC GCTGCCACATCAGCAGCTGTTAAGGACGAAGAAGGATCATCTCTCTCCTCCTCCACCACCACCACCTCATCGGACCCTTTCCCGAGGTTCACCGACATGC TCATCACCAACGACGACTCCTCCGCCTCCTCATCCATCGTTGTTTCCGACAACTCTTCGTCGTCGTCCTTTGGCTACCACCACTACTCCCACGGAGGCCA CTACCAGTTTCTGCCGTTCAATCCTAATAGTAGTGGTAGTAGCAGCAGCTTGATATACCCTAGCATCAATGTCTCCAGCCTCAACCAAACGGACGTCAAC TTGCAAGCGTTGGACCAGAATCTACTATTTGCTGGCACTAGTCTTTTAAGAGATCATCATCAAGGCATTATCAATCCTTATCCTGCTGCTGATCCCATGC CTCAATATTGTACCCCTACTACTACTAAGGTGTCGTCAACGTCAGAAATGAGGGAGAACTCGGAAAGGGTGGCGTCGACGGAGAGGGATCAGGTGAAGAG ATGCAACAGTGGGAGCATCGTCAAAGAACAGTCGTCAACGACAGTACAGCTGCAAGCAAGTACTGCAAATAAGAAGTCCAAAGTTGACCAGCCGCGTGCC TCCTGCCCTCCCTTTAAGGTTAGAAAAGAGAAACTTGGTGACAGGATCACCGCCTTGCAGCAGTTGGTTGCCCCTTTTGGCAAGACGGACACAGCATCCG TGTTGATGGAGGCAATTGGATACATCAATTTCCTTCAAAACCAAGTTGAGACTTTAAGCGTGCCTTATATGAAGTCAACTCGCAACAAGCCACCTCAGTC CACGCATTTTCAACAGGCAGAGGGTGGGACTGGAGAAGTATCAAGTAGAGATCTTAGAAGCCGAGGACTGTGTCTGGTACCGCTGTCCTGCACGTCCTAC ATAACCAACATCGACACCGGAGCTGCCGGTGGCTACTCCGGAGCTATGTGGCCACCTCCACCGCCCCATTTCGGCCAAGGAACATACAATTTGTAG
AA sequence Show only first row Show all	>Lus10010638 pacid=23143646 polypeptide=Lus10010638 locus=Lus10010638.g ID=Lus10010638.BGIv1.0 annot-version=v1.0 MDESSGNHQLRHHQLQVVGGSSSSSSSSSFSSQPSSSAAPRSNNLYGGATGGDHGWTQNFTFCNPLNNHYPSDGGLVNPARNHHQDHLSFQWNTNSHRFT AATSAAVKDEEGSSLSSSTTTTSSDPFPRFTDMLITNDDSSASSSIVVSDNSSSSSFGYHHYSHGGHYQFLPFNPNSSGSSSSLIYPSINVSSLNQTDVN LQALDQNLLFAGTSLLRDHHQGIINPYPAADPMPQYCTPTTTKVSSTSEMRENSERVASTERDQVKRCNSGSIVKEQSSTTVQLQASTANKKSKVDQPRA SCPPFKVRKEKLGDRITALQQLVAPFGKTDTASVLMEAIGYINFLQNQVETLSVPYMKSTRNKPPQSTHFQQAEGGTGEVSSRDLRSRGLCLVPLSCTSY ITNIDTGAAGGYSGAMWPPPPPHFGQGTYNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10010638 [exp]	0	1
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	3.3	0.8734
AT3G13980			unknown protein		Lus10037659 [exp]	4.0	0.8142
AT3G13980			unknown protein		Lus10015641 [exp]	7.3	0.8172
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	10.4	0.8283
AT1G65440		GTB1	global transcription factor gr...		Lus10029079 [exp]	11.5	0.7809
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	11.9	0.8316
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	12.2	0.8200
AT4G21450			PapD-like superfamily protein ...		Lus10018534 [exp]	16.5	0.7917
AT5G06610			Protein of unknown function (D...		Lus10015972 [exp]	16.5	0.8363
AT5G52882			P-loop containing nucleoside t...		Lus10027551 [exp]	17.0	0.7667

Compare expression of checked genes

Lus10010638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.