Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22100 456 / 1e-158 Inositol-pentakisphosphate 2-kinase family protein (.1) AT5G42810 452 / 4e-157 ATIPK1 inositol-pentakisphosphate 2-kinase 1 (.1) AT1G58643 392 / 9e-133 Inositol-pentakisphosphate 2-kinase family protein (.1) AT1G59312 392 / 9e-133 Inositol-pentakisphosphate 2-kinase family protein (.1) AT1G58936 392 / 9e-133 Inositol-pentakisphosphate 2-kinase family protein (.1) AT1G59171 47 / 5e-07 Inositol-pentakisphosphate 2-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024274 [exp] 630 / 0 AT1G22100 521 / 0.0 Inositol-pentakisphosphate 2-kinase family protein (.1) Lus10033202 [exp] 81 / 1e-18 AT1G59171 81 / 6e-22 Inositol-pentakisphosphate 2-kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G230200 [exp] 546 / 0 AT5G42810 508 / 1e-178 inositol-pentakisphosphate 2-kinase 1 (.1) Potri.002G032900 [exp] 533 / 0 AT5G42810 494 / 2e-173 inositol-pentakisphosphate 2-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF06090 [flax] [poplar] Ins_P5_2-kin Inositol-pentakisphosphate 2-kinase
Representative CDS sequence Show only first row Show all	>Lus10010640 pacid=23143656 polypeptide=Lus10010640 locus=Lus10010640.g ID=Lus10010640.BGIv1.0 annot-version=v1.0 ATGGAGTCCAAGTTAGACGAGAAAGATGCGGAGGATTGGGTTTACAGAGGGGAAGGAGCAGCTAATCTCGTTCTCTCTTACTCTGGATCATCCCCTGCTT TTGCCGGGAAAGTGATGAGGATGCAGAAAGTAGCTAGAAATGGATCGTCGGTGGCCTTCCAGAATCCCCCTGGCTTGACGGAGCATGAACGTCTTCTGTG GAAAGAAACTAAGGAGTTAGTTGCTTCTCCAGACAAAGAGGCTGCTGAGCGGCTATTTGCCCACTTCGTCATGGGTCCTCTGTTGGGTCCAAATCACGTT GATGCTGGTACCTTGGTCAGAGTGTCTAGGGGGTTCCTCCAGTGTGTTGAAAAGAAGTTGATTGGTGTGCGTCCGTCTTCACGGGTTGATGCTGCCAAGC TGGATACAGAACGTGATTCTGTTGTGATTATGTCCGATCACACCTTGTTTCCTCGTGGTGATTGTAAAAGTGGACCCTGCATATCTGTTGAGATTAAGCC CAAGTGTGGGTTTCTACCAGTATCAAGCTTTATTGCCGAAAAGAATGCTATTAAAAAGACCACAACTCGTTTTAGAATGCATCAAGCCTTAAAGCTACGC AAGAAAGAGAAGAGTACGAGTAGAAAAGTAAAGGGAAAGCTTGTACCTTTCCGTTGTCATACTTCATCCACATTAGCCAATGCTACGTTTCAGATATCAG AGATAAGCAAGTACAATCCGCTTGATCTGTTTTCTGGTTCCAAGGAAAGAATTCATAAAGCTATCAAGGATCTATACCAGACGCCTCAGAACAATTTTCG CGTATTCTTGAATGGTTCTCTTATATTGGGGGGATTGGGTGGTAGCACAAGCAAAACAAGCTTTGTGATTGAGAAAGCTTTTGAAGATGCATTAGACGGT GTCATACAAGGAACTGAAGGTTCACGGACTGCAAGTTTGATGCAGCTTGTTGCTGAGACAGTTCACCTCTCGGGGGTACTTGATCTGCTTCTTGAGGTCC AGAAGCTTGATCGTTTTGACGTTGAAGGAGCGATTCATGCATATTACACTGTTGTATCCAAACCTTGCACGGTATGCAGGGATTTAAAGGATGCAGAATC GATTGAGACATTTGCATCATTGCACTCAATTCCTATGGACGAGAGCTTGAAAATTGTGAAGGATTTTCTGATAGCTGCATCTGCAAAGGATTGCAGTCTG ATGTTTAGTTTCACACCAACAGATGATGGATATGGTTCTATTCATCTACCGTCGTCCAATCAGAATTTTGATTACAAGGTGAATTTCATTGACTTGGATT TGAAACGTTTAAAGAAGATAGAGGACTACTATGAACTGGACCAGAAGATAGTGAAGTGCTATAATCAGACGGAACTTAATCCTGCGAGCTCATAG
AA sequence Show only first row Show all	>Lus10010640 pacid=23143656 polypeptide=Lus10010640 locus=Lus10010640.g ID=Lus10010640.BGIv1.0 annot-version=v1.0 MESKLDEKDAEDWVYRGEGAANLVLSYSGSSPAFAGKVMRMQKVARNGSSVAFQNPPGLTEHERLLWKETKELVASPDKEAAERLFAHFVMGPLLGPNHV DAGTLVRVSRGFLQCVEKKLIGVRPSSRVDAAKLDTERDSVVIMSDHTLFPRGDCKSGPCISVEIKPKCGFLPVSSFIAEKNAIKKTTTRFRMHQALKLR KKEKSTSRKVKGKLVPFRCHTSSTLANATFQISEISKYNPLDLFSGSKERIHKAIKDLYQTPQNNFRVFLNGSLILGGLGGSTSKTSFVIEKAFEDALDG VIQGTEGSRTASLMQLVAETVHLSGVLDLLLEVQKLDRFDVEGAIHAYYTVVSKPCTVCRDLKDAESIETFASLHSIPMDESLKIVKDFLIAASAKDCSL MFSFTPTDDGYGSIHLPSSNQNFDYKVNFIDLDLKRLKKIEDYYELDQKIVKCYNQTELNPASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10010640 [exp]	0	1
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10019712 [exp]	2.2	0.9010
AT5G54850			unknown protein		Lus10011150 [exp]	5.2	0.9180
AT1G05410			Protein of unknown function (D...		Lus10004900 [exp]	5.3	0.9012
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026255 [exp]	6.0	0.8962
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10034705 [exp]	7.1	0.9086
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10015686 [exp]	11.4	0.8920
AT1G31120		KUP10	K+ uptake permease 10, K+ upta...		Lus10038362 [exp]	12.3	0.8963
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026256 [exp]	13.4	0.8905
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	13.6	0.9010
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	19.8	0.9058

Compare expression of checked genes

Lus10010640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.