Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75310 196 / 2e-50 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT4G36520 189 / 2e-48 Chaperone DnaJ-domain superfamily protein (.1) AT4G12780 160 / 6e-40 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12770 159 / 1e-39 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 148 / 4e-37 Chaperone DnaJ-domain superfamily protein (.1) AT1G75100 115 / 4e-26 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 89 / 6e-18 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033205 [exp] 1917 / 0 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1) Lus10024270 [exp] 644 / 0 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10007394 [exp] 618 / 0 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10041769 [exp] 194 / 1e-49 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10012302 [exp] 172 / 9e-43 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10012303 [exp] 164 / 7e-41 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016079 [exp] 163 / 1e-40 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016078 [exp] 163 / 3e-40 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10018854 [exp] 137 / 5e-33 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229300 [exp] 237 / 3e-63 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G033800 [exp] 229 / 1e-60 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 205 / 3e-53 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 204 / 5e-53 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G197600 [exp] 178 / 2e-45 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G217200 [exp] 175 / 2e-44 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G079200 [exp] 137 / 1e-33 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 134 / 1e-32 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G081500 [exp] 116 / 5e-27 AT1G30280 228 / 2e-69 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 105 / 6e-23 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010642 pacid=23143639 polypeptide=Lus10010642 locus=Lus10010642.g ID=Lus10010642.BGIv1.0 annot-version=v1.0 ATGGAGTCTCAGCCGGCTTCTTCTGCCGCTGATGCCCATGCCAACGGCCGGAAGCACGAGTACGGCATGTTTAGCGGTCCAATGAAGCTCGGGTCTAGAG TGGAGGATTACAGGGAGATATTTGAATGCTCGGGAACGTCGTCCATTCCGGTGTTGGATGTTCCCGAGTTGAATGAGAGGAAGGCTTCCGTCGAGCCTCG GAACTCTCGGCTGGACTACTCCAAGATTTTCGGCGGACTCGGAGAAGCGGACATTGCTATGCCTTACGACAACTTGAATTCGAGAGCGGAGACGGATATT CGGGTTCCAGCAGAATCAAGATCACAGTTTTTAGGGCATGAGCAATCTACGTTTGCAAGGAAGAGAATGCCAGCGGAAGCATCTCTTCAGCCATTGGATG GTGGGAAAAATGCCAACGTGTTGCATCTTAAGACAAACTCGGGAGGCAGAATGGGGAGAAGTGGCATGACCCACGTTGCTCAGTTCCATGCTGTTCCAGG CTTCACTCATCTAGTTGACGAAAATGTGCCCTCGGGATCTACTGGAGGGACCAAGTCTGGACGCTTTGTGCGTACCAATGTTCATCTTAATCTCAGTGAG GAGATGAAGGAAACCAGATCCAAGAGGAGAGCTTACTCCGGACCACTCCTCTTCAGCAATGCTTCGGGACAGTACACAGAACATCACAGGACGTCTAGTT CCATATTGAATGATGTATCGTCTGACCTTCACAGAGGCTCACATCCATCTGCAGTTTGTTCATCGTCTCCAAGCTCACCACTTAGTTTTGGTAATGAGAA GGCTGCTTCCAACAGGTTGCTGAACTCCAAATTTGGGTTTTCTAAAAGTGCTACTGGCTATTATTCACCACCTTTCTTGGATGATGAAGTAGATGCAAAT TCAACTGCTGTCGCTTCTGCAGCTGCGGTGAGAAAGGCAATAGATGATGCTGAAGCAAAAATTAAATATGCAAAGGAACTCATGGAAAGGAGAAAAGAAG GCCGACATAATCGTTCGAAACCAAAGGTCAATCATGGCTTGAAGTCTGAGACGAAACTGGAAGCTATATCAGCTGAAATGTACAGGAGAGATGATGCTCC AAAACGGCCAGTCGTAAACTGTTCACCAGCTCAAATTTCAGGAGAAGTCCGCCAAGTGAATTTGGATTCCAGGGACCAGAAGAAAGATTCTCTTGCTAGA CCTTCTCTTACAGTAAACCACCAGCTAGAAACCACCTTTACTAAAGTTGATTCCAGACTGGAAGAAATAGAGATCTGCAAAACTCCGCAAGAGTTTTCTG AAGCTTCCATTAGCAAAGGGCTCAGGCCATCAATATCAGAGTTAAACGAACAAGACCTGGGGCAAAAAGTAATACCAAGTAGTTATGAGAACAAATGGAA GGAGAAGATGAAAACATCATTTCTGCAGGACAAATTTGAAAACATAATGAAAATGCTGCGAGCACCAGAAGACGTTCCAGATGTTGAATACCAACTGATG GTCGAAAGAAAATCAGGTGGGATAAAAGGAAATGTAGCTCATGTGAGAAGTGAAGAGAAACAAGAGGCTGCATGCACCAAAGAGGAAATAGAAGGTAGAT CAAACGAAGGCACCGCAAGGAAGGAGGATGAGAGCACGGTTAAAGTTAATTCCTGGCTGAATAATATTGCCAAGGGGCATAAGGAACAAAAAGATTATCA GAATGGCGACGAAATGGAGAAGAAACAAAGTTTTGATAGGAGGGAAGATGACTCAGAGAACACTTCTGCTAAAATTGATGGCGGGGAACCATCAAAAGTA AGGTTTGACCATTTTGGGATAGAGAAGGAAGGTCGAGACAAGTCTACAGCAAGTGATCAGGAAGTAGAGATAGAGAAGGTTGAAGAAGTTGAGAAAGAAA GACGGATTGGTGATGATGATCCTATTAATTCTACTAGCAGAGGGCGAGAAAACTTTTCCAATTCCATGGACAGTAAGAGGTTAGACTCGGTGGTTCATCA AAGGTTGGAAGGTGATGCAAAGGATAACGTTGCTCAAGAGCCTCTTGGATTGCTGAATGGCAACGTTGAAGTGCTTCATGCACTGCACGAGCGAGAGGAA AGTGAGAATGCCGAACAGATTAATGAATCCCATAGATACAGAGAGCTTGTAGTTACAGCGAATGACAGGGCCACCAACCCTTTCTCTGGGCCCGGAGACA TTGAAAAACAATCAAATGTTTTTGAAGAGACATATATCTTTGAGGGAGGGGAGGATTGTACAAGGGTTGACCCTTTTAATTCTACTGGATTCGATGGGAT CGGAAAACAGAGCGATGAGCCCCTTATTGTTGATGAAAATGGGGTCTGTTCAAGTGGACTTGTTTTCAACTTTAAGGACCAGCATACTGAAGACAGTGCA GCAAAAAGCAAAGGAACCTATTGTCCTGAAAATCACGTAGAAGAAGCGACTAGACTGTCAGGAGAAAGCAAAGATAACAATAAGGATGCTGAAGTTGGCA GCACAGATGAAGATACTGCTAGTAACCTTGCATCTCTTAATGAGGTAAAGGTGTTACCAAATGGGGAAGAATCCAGGCCGCTCGCAGAACTGGAAAAGCA TGTAGAAGAAGCCATTGGTGATTTGGAAGATCATGATAAGGATAACGTTAACAATGGTAAATCGGTTAGTGAAAGGAAATTATCGGATGATGGAATAAGT AAAAGAACAAGTCAAGCATTTCGGGAGTCTGAGAAGGAAGAACCTGTCGAGGCAGCAGTATCTTCACATGAGAAAACAACTAAAAGTATCATTGATGACT CTGAGGATGCTTATTATGAGGTGCTCCAAATGCAAGAGACAGAAGAAAACCAAAGCTCGCGAATGGACGTGGAGGTGGAAAGGCAGCAACCCAGGGAAAA GGAAGTTGCAAAAGAGAGAGACTTGGAGAAAGAGAAAGAGCGAAGAGTTGTCGAAAGGGCAATAAGGGAAGCACGCGAGAGGGCATTTACTGAAGCTCGA GAGAAGGCAGAAAAGTTAGCTGCAGCAGAAGCTCAGCGAAGAGCAAAAGCTGTGGCTGCTGCTCGAGAGAGGTCTGAGAGGGCTATCGCATCTGAGAAAG CTTCCACAGAAACCAAACTGAAAGCTGAGCGTGCGGCAGTTGAAAGAGCAACTGCAGAAGCTAGAGAGCGGGCTCTGGAGAAAGCATTATCTGAAAAGGC TTCCCTCAAAGGGAAAAATTGTGCAGAGAAGTCTCCTGCCGTTTCAACTGATGATGGAAGACCCATTAATCAACGACACAAAAACTCAGGTTACAACACC AGCTCAAGACATCCAAGTTCTACAACTAGCGGTGCTGAAATCTCTGGTAATGGAGCAAACGGTGAATCTCTGAAATCTAAAGCCTCGTTGGAGAAGCAGC AGCAAATGGCTGAGCGTGCGGCGAAAGCTCTGGCAGAGAAGAATATGCGCGATCTTCTTGTTCAGAAGGAGCAAGCTGAAAAAAATAGACTAGCAGAAGT TGTGGATGCGGAGATAAAAAGGTGGTCCAGCGGGAAAGAGCGGAACTTGCGAGTTCTGCTTTCTACACTTCACTATATCCTTGGACCTGACAGTGGTTGG CAAGCAATTCCTAGGACGGATCTTAACTCAGCTACTGCTGTTAGGAAAGCTTACAAGAAAGCAACTCTGTTCGTCCATCCTGATAAGCTGCAGCAGCGCG GTGCCAGCATTCGCCACAAGTACGTCTGCGAGAAGGTCTTCGAACTTCTGAAGATTCTCGCGGAAGCCTTTGGTGGGGATGCAACCAGCAGCGGAGGACC AACAGAAAATAGTGAAGAAGTCATGGAAATGTTCACCAATTGA
AA sequence Show only first row Show all	>Lus10010642 pacid=23143639 polypeptide=Lus10010642 locus=Lus10010642.g ID=Lus10010642.BGIv1.0 annot-version=v1.0 MESQPASSAADAHANGRKHEYGMFSGPMKLGSRVEDYREIFECSGTSSIPVLDVPELNERKASVEPRNSRLDYSKIFGGLGEADIAMPYDNLNSRAETDI RVPAESRSQFLGHEQSTFARKRMPAEASLQPLDGGKNANVLHLKTNSGGRMGRSGMTHVAQFHAVPGFTHLVDENVPSGSTGGTKSGRFVRTNVHLNLSE EMKETRSKRRAYSGPLLFSNASGQYTEHHRTSSSILNDVSSDLHRGSHPSAVCSSSPSSPLSFGNEKAASNRLLNSKFGFSKSATGYYSPPFLDDEVDAN STAVASAAAVRKAIDDAEAKIKYAKELMERRKEGRHNRSKPKVNHGLKSETKLEAISAEMYRRDDAPKRPVVNCSPAQISGEVRQVNLDSRDQKKDSLAR PSLTVNHQLETTFTKVDSRLEEIEICKTPQEFSEASISKGLRPSISELNEQDLGQKVIPSSYENKWKEKMKTSFLQDKFENIMKMLRAPEDVPDVEYQLM VERKSGGIKGNVAHVRSEEKQEAACTKEEIEGRSNEGTARKEDESTVKVNSWLNNIAKGHKEQKDYQNGDEMEKKQSFDRREDDSENTSAKIDGGEPSKV RFDHFGIEKEGRDKSTASDQEVEIEKVEEVEKERRIGDDDPINSTSRGRENFSNSMDSKRLDSVVHQRLEGDAKDNVAQEPLGLLNGNVEVLHALHEREE SENAEQINESHRYRELVVTANDRATNPFSGPGDIEKQSNVFEETYIFEGGEDCTRVDPFNSTGFDGIGKQSDEPLIVDENGVCSSGLVFNFKDQHTEDSA AKSKGTYCPENHVEEATRLSGESKDNNKDAEVGSTDEDTASNLASLNEVKVLPNGEESRPLAELEKHVEEAIGDLEDHDKDNVNNGKSVSERKLSDDGIS KRTSQAFRESEKEEPVEAAVSSHEKTTKSIIDDSEDAYYEVLQMQETEENQSSRMDVEVERQQPREKEVAKERDLEKEKERRVVERAIREARERAFTEAR EKAEKLAAAEAQRRAKAVAAARERSERAIASEKASTETKLKAERAAVERATAEARERALEKALSEKASLKGKNCAEKSPAVSTDDGRPINQRHKNSGYNT SSRHPSSTTSGAEISGNGANGESLKSKASLEKQQQMAERAAKALAEKNMRDLLVQKEQAEKNRLAEVVDAEIKRWSSGKERNLRVLLSTLHYILGPDSGW QAIPRTDLNSATAVRKAYKKATLFVHPDKLQQRGASIRHKYVCEKVFELLKILAEAFGGDATSSGGPTENSEEVMEMFTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	0	1
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	1.7	0.9506
AT3G22520			unknown protein		Lus10041202 [exp]	2.0	0.9444
AT3G53440			Homeodomain-like superfamily p...		Lus10039632 [exp]	2.8	0.9395
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10033205 [exp]	3.0	0.9391
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	3.2	0.9459
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	3.5	0.9303
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10022338 [exp]	3.7	0.9284
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	4.2	0.9448
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	4.4	0.9188
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	4.7	0.9309

Compare expression of checked genes

Lus10010642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.