Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20860 323 / 4e-104 FAD-binding Berberine family protein (.1) AT1G30710 320 / 5e-103 FAD-binding Berberine family protein (.1) AT1G30760 317 / 1e-101 FAD-binding Berberine family protein (.1) AT5G44410 317 / 1e-101 FAD-binding Berberine family protein (.1) AT1G34575 314 / 7e-101 FAD-binding Berberine family protein (.1) AT5G44440 314 / 8e-101 FAD-binding Berberine family protein (.1) AT4G20820 311 / 2e-99 FAD-binding Berberine family protein (.1) AT1G30700 305 / 4e-97 FAD-binding Berberine family protein (.1) AT2G34790 303 / 3e-96 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44390 298 / 2e-94 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023363 [exp] 328 / 1e-106 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038436 [exp] 327 / 2e-105 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 325 / 6e-105 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 318 / 3e-102 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 315 / 3e-101 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 313 / 4e-100 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 312 / 9e-100 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 308 / 2e-98 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10026290 [exp] 307 / 6e-98 AT5G44390 473 / 1e-162 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063400 [exp] 511 / 2e-177 AT4G20860 353 / 8e-116 FAD-binding Berberine family protein (.1) Potri.001G440700 [exp] 361 / 6e-119 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 353 / 6e-116 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 351 / 7e-115 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 350 / 2e-114 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158600 [exp] 348 / 1e-113 AT1G30760 499 / 5e-173 FAD-binding Berberine family protein (.1) Potri.011G162828 [exp] 347 / 2e-113 AT5G44440 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462700 [exp] 347 / 2e-113 AT1G30760 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461800 [exp] 344 / 2e-112 AT5G44440 516 / 1e-179 FAD-binding Berberine family protein (.1) Potri.011G158100 [exp] 343 / 7e-112 AT5G44440 519 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10010643 pacid=23143635 polypeptide=Lus10010643 locus=Lus10010643.g ID=Lus10010643.BGIv1.0 annot-version=v1.0 ATGGCAGCGGCAGCAAAGTACTCATCATCGTTACTACTTCTCTTCATATTCTTCCTCTTTCACTTCCCCCATACCACTACAACATCACTGATCTCCAAAC CCACAACCACACTAACATCATGCTTCCACCAAAACCAAATCCAGAATTTCACCACACTAACATCCAACCCAACAACATTCTACACCCTCCTGCGCTACTC AATCCAAAACCTTCGTTTCGATTCGCCAAGCACACAGAAGCCACTAGCCATTGTGCTGCCGTCCACAGTGGAGGAGCTTTTCGGAACGGTGTCGTGTTGT AGAAGACATAATGTAGCTGTAAAGGTCAGGTGCGGTGGGCACAGCTACGAGGGGACTTCTTTCTCTCCAGGGGCAGCAGGGAATAGTGATGATTTCGTTA TCGTAGATTTGATGAGAATGAACGGAGTGTCGGTTGACTTGGAGAGTGAGACGGCTTGGGTGGAAGGTGGAGCAACTCTGGGTGAAACTTACTGGGCAAT CGCTGAAGCTAGTCATGATGCTTTGGCCTTTTCAGCTGGTTCATGTCCTACTGTTGGCGTTGGTGGCCATATCGCTGGTGGTGGCTATGGTTTGCTCTCC AGAAGGTATGGAGTGGCAGCAGACAACGTAGTGGACGCACTTCTGGTGAGCGCAAATGGTGTCCTACTAGACCGAAAAGCCATGGGCGAAGAAGTCTTCT GGGCTATAAGAGGCGGCGGTGGAGGTACCTATGGAATCATCTACGCTTGGAAAATCAATCTACTCAAAATCCCACCTCTACTCACAGCCTTCACCGTCTC CAGACAACCCTCTGCCAAATCCAACCTCTCCAACTTACTCACCAAATGGCAGAGCGTCGCACCAAACCTAAACCCTGACTTCTACTTATCCTGCTTCGTC GGATCCTCCTTGCCCCAGGCCCCCAAACCAAACCAAATCTCAGCTACTTTCAAAGGACTATACCTCGGCCCTACACAAGCAGCATTATCAACACTGAACA GTGTCTTCCCTGAATTAGAGATTGTAGCAGCCGACTGCTACGAAATGAGCTGGATCGAGTCGGTTCACTTCTTCTCCGGGTTGGACCCTGTCAGAAGCTC TGTTCTTGACTTGAAAGATCGTTACTTTGAGGATAAGCACTGCTTCAAGGCTAAATCGGACTACGTCAGGGATGAAATTCCTGTAAAGGGTATTGAGGAA ATAGTTCAAATTTTGGAGAGAGAGCCCAAAGGGTATGTGATTTTGGATCCCTACGGTGGGAAGATGAGTGAAATTAAGAGTGATGCCATTGCTTTCCCGC ACAGGAAAGGCAACCTCTATACGATTCAGTACTTGGTTGAGTGGAGAGAAGAAGAGGAGGATATTGAGAGCAGCGCTCAGTATGTTGAATGGATAAGGGA GTTTTATGAGGCCATGACACCTTTTGTGTCCAAATCTCCCAGAGCTGCTTACGTTAATTACATGGATTTTGATTTGGGCGAGGATGCTAGGGTTTGGGGT GAGAAGTATTTCTTGAATAATTTTGATAGGTTGGTGATGGCTAAGACATTGATTGATCCTAACAATGTTTTCTACAATCGGCAGAGTATCCCTACTTTGT CATCATTAATGGAGTTGAGGGATGATCATTAG
AA sequence Show only first row Show all	>Lus10010643 pacid=23143635 polypeptide=Lus10010643 locus=Lus10010643.g ID=Lus10010643.BGIv1.0 annot-version=v1.0 MAAAAKYSSSLLLLFIFFLFHFPHTTTTSLISKPTTTLTSCFHQNQIQNFTTLTSNPTTFYTLLRYSIQNLRFDSPSTQKPLAIVLPSTVEELFGTVSCC RRHNVAVKVRCGGHSYEGTSFSPGAAGNSDDFVIVDLMRMNGVSVDLESETAWVEGGATLGETYWAIAEASHDALAFSAGSCPTVGVGGHIAGGGYGLLS RRYGVAADNVVDALLVSANGVLLDRKAMGEEVFWAIRGGGGGTYGIIYAWKINLLKIPPLLTAFTVSRQPSAKSNLSNLLTKWQSVAPNLNPDFYLSCFV GSSLPQAPKPNQISATFKGLYLGPTQAALSTLNSVFPELEIVAADCYEMSWIESVHFFSGLDPVRSSVLDLKDRYFEDKHCFKAKSDYVRDEIPVKGIEE IVQILEREPKGYVILDPYGGKMSEIKSDAIAFPHRKGNLYTIQYLVEWREEEEDIESSAQYVEWIREFYEAMTPFVSKSPRAAYVNYMDFDLGEDARVWG EKYFLNNFDRLVMAKTLIDPNNVFYNRQSIPTLSSLMELRDDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44440			FAD-binding Berberine family p...		Lus10010643 [exp]	0	1
AT4G01310			Ribosomal L5P family protein (...		Lus10036391 [exp]	1.7	0.9782
AT2G20030			RING/U-box superfamily protein...		Lus10000885 [exp]	4.1	0.9203
					Lus10020451 [exp]	4.7	0.9738
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	5.5	0.9736
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	6.6	0.9711
					Lus10008791 [exp]	7.4	0.9711
					Lus10021851 [exp]	8.1	0.9711
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Lus10034287 [exp]	8.2	0.8258
					Lus10012440 [exp]	8.8	0.9711
					Lus10026713 [exp]	9.4	0.9660

Compare expression of checked genes

Lus10010643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.