Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47270 408 / 5e-141 TUB AtTLP6 tubby like protein 6 (.1.2) AT2G18280 387 / 3e-133 TUB AtTLP2 tubby like protein 2 (.1.2) AT2G47900 364 / 8e-124 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G76900 349 / 2e-117 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G25280 347 / 1e-116 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT3G06380 330 / 5e-111 TUB ATTLP9 tubby-like protein 9 (.1) AT1G43640 330 / 2e-110 TUB AtTLP5 tubby like protein 5 (.1) AT5G18680 321 / 3e-107 TUB AtTLP11 tubby like protein 11 (.1) AT1G53320 289 / 6e-95 TUB AtTLP7 tubby like protein 7 (.1) AT1G16070 62 / 3e-10 TUB AtTLP8 tubby like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033208 [exp] 677 / 0 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10010833 [exp] 638 / 0 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10033209 [exp] 637 / 0 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2) Lus10014299 [exp] 410 / 1e-141 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10041757 [exp] 399 / 2e-137 AT2G18280 478 / 9e-169 tubby like protein 2 (.1.2) Lus10026007 [exp] 399 / 2e-137 AT2G18280 471 / 6e-166 tubby like protein 2 (.1.2) Lus10028309 [exp] 397 / 9e-137 AT2G18280 481 / 1e-169 tubby like protein 2 (.1.2) Lus10033977 [exp] 356 / 1e-120 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10012803 [exp] 350 / 2e-119 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228500 [exp] 483 / 1e-170 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.002G034600 [exp] 480 / 2e-169 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.005G121600 [exp] 421 / 4e-146 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.007G023400 [exp] 419 / 2e-145 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.005G192400 [exp] 365 / 8e-124 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.005G192300 [exp] 358 / 2e-121 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 356 / 1e-120 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.008G195200 [exp] 353 / 7e-120 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.010G031000 [exp] 351 / 8e-119 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.001G390200 [exp] 293 / 2e-96 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10010645 pacid=23143651 polypeptide=Lus10010645 locus=Lus10010645.g ID=Lus10010645.BGIv1.0 annot-version=v1.0 ATGTCGTTCAAACGCGTTGTTAGGGAGATGAGGGACAGCATGGAGAGCAAATCGAGGGGGAGATCCAGCCGCCGGGGAAAAGCCCACATAGCACCGGAAT GTGGGTTGGAGGTACCCAGCCAATGGGATAACGGCGGCGATGATCAGGGTCCGTGGGCTAATTTGCCGGCGGAGCTTCTAAGGGATATAATTCACCGGAT TGAATCGCGAGAGATCTCGTGGCCATCTAGGCGTGATGTGGTGGTTTGTGCTGCCGTCTGCCGTTCGTGGCGGGGGATCACGAAAGAGATCGTGAAGACC CCAGAGCAATGCAGCTGCCTCACTTTTCCCATCTCGCTAAAGCAGCCTGGGCCGAGAGATGCTCCAATCCAGTGCTTTATCAAGAGAGAAAGGGCAACTT CAACGTTTCAGTTGTACCTTGGTCTCAGCCCTGCTCTGTCTGGCTGTGCGAGCAAGTTGTTGTTGGCTGCTAAGAAGGTTAGAAAGGCAAGAAGTACTGA GTTTAGGATATCCTTTGTTGGCACTGACTTTTCTCAAGCCAGTAACACTTTTGTTGGAAAAATGAGGTCTAATTTCCTGGGTACCAAATTCACAATTCTT GACAGTCAACCCTCCAATCCTGCTCACATGCAGTCTGGTCGAAAAGTTAATTCAGTTCAGGTATCATCATACCCTCCTGCTAGAGGGTTCAGCATCGCCA ACGTAGTTTACGAGCTCAATATCTTGCGTACAAGAGGTCCAAGAAGGATGCGATGCACAATGCAGTCAATTCCAATTTCATCAGTCCAGGAAGGAGGGAC TGCTCCTACTCCTACAGAGTTGGCGACATTCTGCAATGACAAACTGTCTTCGTCGCCAAGTTCAAAAGGAAACAAGTCTGTCAATGACTTCAGCCAGTTA CCGGGTGAGGAGGCACTGTGCAAGGATCCCCTGGTTTTGAAAAACAAAGCTCCTAGATGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTCAAGGGGC GTGTGACGGTGGCTTCAGTGAAGAACTTCCAGCTAGTAGCAGCTGCAGAACCTTCACACAATGTTTCACCTGAGGAGCAGGAGAAAGTGATTCTGCAATT TGGAAAGATTGGTAAAGACATCTTCACCATGGACTATCGCTATCCGATTTCTGCCTTCCAAGCTTTTGCAATCTGCCTTAGTAGCTTTGACACAAAGCCA GCTTGTGAGTGA
AA sequence Show only first row Show all	>Lus10010645 pacid=23143651 polypeptide=Lus10010645 locus=Lus10010645.g ID=Lus10010645.BGIv1.0 annot-version=v1.0 MSFKRVVREMRDSMESKSRGRSSRRGKAHIAPECGLEVPSQWDNGGDDQGPWANLPAELLRDIIHRIESREISWPSRRDVVVCAAVCRSWRGITKEIVKT PEQCSCLTFPISLKQPGPRDAPIQCFIKRERATSTFQLYLGLSPALSGCASKLLLAAKKVRKARSTEFRISFVGTDFSQASNTFVGKMRSNFLGTKFTIL DSQPSNPAHMQSGRKVNSVQVSSYPPARGFSIANVVYELNILRTRGPRRMRCTMQSIPISSVQEGGTAPTPTELATFCNDKLSSSPSSKGNKSVNDFSQL PGEEALCKDPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSHNVSPEEQEKVILQFGKIGKDIFTMDYRYPISAFQAFAICLSSFDTKP ACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010645 [exp]	0	1
AT2G45010			PLAC8 family protein (.1.2)		Lus10028184 [exp]	2.0	0.8911
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10013950 [exp]	6.0	0.8642
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10028978 [exp]	7.5	0.8567
					Lus10011351 [exp]	8.7	0.8136
					Lus10039994 [exp]	12.6	0.7951
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	13.5	0.8726
AT1G49000			unknown protein		Lus10042953 [exp]	13.9	0.8332
					Lus10034297 [exp]	14.7	0.8155
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	19.4	0.8479
AT4G19410			Pectinacetylesterase family pr...		Lus10034762 [exp]	21.6	0.7636

Compare expression of checked genes

Lus10010645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.